miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32211 5' -45.8 NC_007016.1 + 31835 0.66 0.999773
Target:  5'- gACAGGUAGCgugggcguaccACGCCGuguuCUGUAcgUGGg -3'
miRNA:   3'- -UGUUCAUCG-----------UGUGGUu---GACGUuaAUU- -5'
32211 5' -45.8 NC_007016.1 + 60413 0.66 0.999773
Target:  5'- aACAAGc-GCuGCACCGAuCUGCAGUUu- -3'
miRNA:   3'- -UGUUCauCG-UGUGGUU-GACGUUAAuu -5'
32211 5' -45.8 NC_007016.1 + 89590 0.67 0.999521
Target:  5'- cCAAGaaaUAGUACACCGagaacGCUGCGAa--- -3'
miRNA:   3'- uGUUC---AUCGUGUGGU-----UGACGUUaauu -5'
32211 5' -45.8 NC_007016.1 + 110564 0.67 0.999394
Target:  5'- gGCAuccaGGCACGgCAGCUGCAAa--- -3'
miRNA:   3'- -UGUuca-UCGUGUgGUUGACGUUaauu -5'
32211 5' -45.8 NC_007016.1 + 26249 0.67 0.99924
Target:  5'- gGCGuGGUGGCuCGCCGGCUGUGGg--- -3'
miRNA:   3'- -UGU-UCAUCGuGUGGUUGACGUUaauu -5'
32211 5' -45.8 NC_007016.1 + 43436 0.68 0.998132
Target:  5'- cCAAGUgaugaggauagcgaAGCACACguACUGCAGaUAAa -3'
miRNA:   3'- uGUUCA--------------UCGUGUGguUGACGUUaAUU- -5'
32211 5' -45.8 NC_007016.1 + 26213 0.68 0.997861
Target:  5'- gGCGGGggcuggAGC-CACCGGCUGCGu---- -3'
miRNA:   3'- -UGUUCa-----UCGuGUGGUUGACGUuaauu -5'
32211 5' -45.8 NC_007016.1 + 121075 0.69 0.996902
Target:  5'- uCGGGUGGCACGCCGGuc-CAGUUAAc -3'
miRNA:   3'- uGUUCAUCGUGUGGUUgacGUUAAUU- -5'
32211 5' -45.8 NC_007016.1 + 7937 0.69 0.99561
Target:  5'- gACAGGUaAGC-CACCGGCgugGCAAUc-- -3'
miRNA:   3'- -UGUUCA-UCGuGUGGUUGa--CGUUAauu -5'
32211 5' -45.8 NC_007016.1 + 125594 0.71 0.985488
Target:  5'- uGCcGGU-GCGCGCCAGCUGCu----- -3'
miRNA:   3'- -UGuUCAuCGUGUGGUUGACGuuaauu -5'
32211 5' -45.8 NC_007016.1 + 70221 0.71 0.985488
Target:  5'- cCAGGUugGGCACACCGACcguccccgUGCAAUc-- -3'
miRNA:   3'- uGUUCA--UCGUGUGGUUG--------ACGUUAauu -5'
32211 5' -45.8 NC_007016.1 + 118868 0.72 0.97017
Target:  5'- cGCGGGgGGCGCGCCggUUGCuGUUGc -3'
miRNA:   3'- -UGUUCaUCGUGUGGuuGACGuUAAUu -5'
32211 5' -45.8 NC_007016.1 + 116747 0.72 0.97017
Target:  5'- aACAGGUGGCACGCuCGGCaGCGu---- -3'
miRNA:   3'- -UGUUCAUCGUGUG-GUUGaCGUuaauu -5'
32211 5' -45.8 NC_007016.1 + 112406 1.07 0.025465
Target:  5'- aACAAGUAGCACACCAACUGCAAUUAAu -3'
miRNA:   3'- -UGUUCAUCGUGUGGUUGACGUUAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.