miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32212 5' -49.4 NC_007016.1 + 17552 0.66 0.996378
Target:  5'- gACAACGGGGucCACGA----ACGCAu -3'
miRNA:   3'- gUGUUGUCCCucGUGCUgauuUGUGU- -5'
32212 5' -49.4 NC_007016.1 + 22481 0.66 0.995733
Target:  5'- cCGCAcccagGCAGGGGGCgccacGCGGCg--GCGCc -3'
miRNA:   3'- -GUGU-----UGUCCCUCG-----UGCUGauuUGUGu -5'
32212 5' -49.4 NC_007016.1 + 62193 0.66 0.994996
Target:  5'- gACcACGGGGGGCGgGGCUAcuucuAACcCAg -3'
miRNA:   3'- gUGuUGUCCCUCGUgCUGAU-----UUGuGU- -5'
32212 5' -49.4 NC_007016.1 + 126018 0.66 0.994996
Target:  5'- -gUAACcGGGAGCugGcGCUGcACGCGc -3'
miRNA:   3'- guGUUGuCCCUCGugC-UGAUuUGUGU- -5'
32212 5' -49.4 NC_007016.1 + 26075 0.66 0.99416
Target:  5'- --uGACAcGGGGGC-CGGCUGcACGCu -3'
miRNA:   3'- gugUUGU-CCCUCGuGCUGAUuUGUGu -5'
32212 5' -49.4 NC_007016.1 + 83893 0.67 0.993214
Target:  5'- cCACAucgugccuauACcGGGAuGCACGugUGGGCAUu -3'
miRNA:   3'- -GUGU----------UGuCCCU-CGUGCugAUUUGUGu -5'
32212 5' -49.4 NC_007016.1 + 123829 0.67 0.993113
Target:  5'- cCACGGCAGGG-GCGuuuccucUGACgGAAUGCAa -3'
miRNA:   3'- -GUGUUGUCCCuCGU-------GCUGaUUUGUGU- -5'
32212 5' -49.4 NC_007016.1 + 114497 0.67 0.993113
Target:  5'- aCGCGGCAugguagcGGGAGCuuGGCauuGCGCAa -3'
miRNA:   3'- -GUGUUGU-------CCCUCGugCUGauuUGUGU- -5'
32212 5' -49.4 NC_007016.1 + 119813 0.67 0.99215
Target:  5'- uCGCggUAGGGGGCGUGGCgcGGcCGCAc -3'
miRNA:   3'- -GUGuuGUCCCUCGUGCUGauUU-GUGU- -5'
32212 5' -49.4 NC_007016.1 + 51807 0.67 0.989627
Target:  5'- -cCAGCAGGGAGCguuGGC-GGACGCu -3'
miRNA:   3'- guGUUGUCCCUCGug-CUGaUUUGUGu -5'
32212 5' -49.4 NC_007016.1 + 29971 0.68 0.987184
Target:  5'- aCGCAcCAacGGGAaacagaaauggucauGCGCGAcCUAGACACAa -3'
miRNA:   3'- -GUGUuGU--CCCU---------------CGUGCU-GAUUUGUGU- -5'
32212 5' -49.4 NC_007016.1 + 76815 0.68 0.978178
Target:  5'- uCGCAGCGGcGGcGGCGcCGGC-AGGCACAc -3'
miRNA:   3'- -GUGUUGUC-CC-UCGU-GCUGaUUUGUGU- -5'
32212 5' -49.4 NC_007016.1 + 89694 0.69 0.972809
Target:  5'- aGCAGCAGGcacaGGCACGACcc--CACAa -3'
miRNA:   3'- gUGUUGUCCc---UCGUGCUGauuuGUGU- -5'
32212 5' -49.4 NC_007016.1 + 106716 0.69 0.969793
Target:  5'- gACGACu-GGAGCACGACUAuccgaauCACc -3'
miRNA:   3'- gUGUUGucCCUCGUGCUGAUuu-----GUGu -5'
32212 5' -49.4 NC_007016.1 + 85029 0.69 0.963059
Target:  5'- aACAACAGGGAGCACcuCUGuuucuacuuuCGCGc -3'
miRNA:   3'- gUGUUGUCCCUCGUGcuGAUuu--------GUGU- -5'
32212 5' -49.4 NC_007016.1 + 116683 0.7 0.946602
Target:  5'- cCGCAGCAGGuGGCaACGcUUAAGCGCGu -3'
miRNA:   3'- -GUGUUGUCCcUCG-UGCuGAUUUGUGU- -5'
32212 5' -49.4 NC_007016.1 + 51420 0.71 0.936803
Target:  5'- gCGCGACAuGGuacGCACGGCUccaggAAACACAg -3'
miRNA:   3'- -GUGUUGUcCCu--CGUGCUGA-----UUUGUGU- -5'
32212 5' -49.4 NC_007016.1 + 10151 0.72 0.907583
Target:  5'- gCGCuuccCAGGGaAGCGCGACgAAGCGCc -3'
miRNA:   3'- -GUGuu--GUCCC-UCGUGCUGaUUUGUGu -5'
32212 5' -49.4 NC_007016.1 + 17169 0.73 0.863821
Target:  5'- cCGCGACGGGGAcaGCGugUGAACGg- -3'
miRNA:   3'- -GUGUUGUCCCUcgUGCugAUUUGUgu -5'
32212 5' -49.4 NC_007016.1 + 113270 1.1 0.00854
Target:  5'- aCACAACAGGGAGCACGACUAAACACAg -3'
miRNA:   3'- -GUGUUGUCCCUCGUGCUGAUUUGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.