miRNA display CGI

Results 1 - 11 of 11 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
32213	3'	-42	NC_007016.1	+	67845	0.66	1
	Target:  5'- --uGGGGcgCUGAGGAUGAu-UUCUGg -3' miRNA:   3'- aauCCCUuaGAUUUUUGCUuuAGGAC- -5'
32213	3'	-42	NC_007016.1	+	16235	0.66	1
	Target:  5'- --cGGGGAUCUGGugcuguuuGACGuAAUCCg- -3' miRNA:   3'- aauCCCUUAGAUUu-------UUGCuUUAGGac -5'
32213	3'	-42	NC_007016.1	+	60350	0.66	1
	Target:  5'- aUAGGGAaaaaagucguAUCUGAGuACGuGAaCCUGg -3' miRNA:   3'- aAUCCCU----------UAGAUUUuUGCuUUaGGAC- -5'
32213	3'	-42	NC_007016.1	+	61311	0.66	1
	Target:  5'- -cGGGGAGUUUGAGAAaGAAAcguuuUCCg- -3' miRNA:   3'- aaUCCCUUAGAUUUUUgCUUU-----AGGac -5'
32213	3'	-42	NC_007016.1	+	94541	0.67	1
	Target:  5'- -cGGGGAAaagCUAAGcGACGAGGUUCg- -3' miRNA:   3'- aaUCCCUUa--GAUUU-UUGCUUUAGGac -5'
32213	3'	-42	NC_007016.1	+	81139	0.67	1
	Target:  5'- -aAGGGAacgucgaAUCUccGGGGGCGAuuguGGUCCUGu -3' miRNA:   3'- aaUCCCU-------UAGA--UUUUUGCU----UUAGGAC- -5'
32213	3'	-42	NC_007016.1	+	107311	0.67	1
	Target:  5'- -aGGGGAGUCaaccGAGACGGAgauAUCCc- -3' miRNA:   3'- aaUCCCUUAGau--UUUUGCUU---UAGGac -5'
32213	3'	-42	NC_007016.1	+	119394	0.68	0.999997
	Target:  5'- -cGGGGGAUCccGGGGACGAc--CCUGa -3' miRNA:   3'- aaUCCCUUAGa-UUUUUGCUuuaGGAC- -5'
32213	3'	-42	NC_007016.1	+	102178	0.7	0.999983
	Target:  5'- --cGGGggUCUGAAuGCGGGA-CCg- -3' miRNA:   3'- aauCCCuuAGAUUUuUGCUUUaGGac -5'
32213	3'	-42	NC_007016.1	+	92640	0.73	0.998702
	Target:  5'- -cAGGGGuUCUGGAAACGAAG-CCa- -3' miRNA:   3'- aaUCCCUuAGAUUUUUGCUUUaGGac -5'
32213	3'	-42	NC_007016.1	+	113343	1.07	0.072598
	Target:  5'- aUUAGGGAAUCUAAAAACGAAAUCCUGc -3' miRNA:   3'- -AAUCCCUUAGAUUUUUGCUUUAGGAC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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