miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32214 3' -56 NC_007016.1 + 13207 0.66 0.908305
Target:  5'- uGGAUUUuuuuaaCCCGUACCUggguccucgaGGACCaCGCCc -3'
miRNA:   3'- -CCUAAG------GGGUAUGGAg---------UCUGG-GCGGc -5'
32214 3' -56 NC_007016.1 + 29910 0.66 0.895646
Target:  5'- gGGAUcugcggUCCCCG-ACCagGGAaaCCGCCGa -3'
miRNA:   3'- -CCUA------AGGGGUaUGGagUCUg-GGCGGC- -5'
32214 3' -56 NC_007016.1 + 42342 0.66 0.888969
Target:  5'- aGGUUCCCCAgACC-CAGcGCCUGUa- -3'
miRNA:   3'- cCUAAGGGGUaUGGaGUC-UGGGCGgc -5'
32214 3' -56 NC_007016.1 + 90741 0.67 0.852287
Target:  5'- cGAUUCCCCGU-CC-CGG-CCUGCUc -3'
miRNA:   3'- cCUAAGGGGUAuGGaGUCuGGGCGGc -5'
32214 3' -56 NC_007016.1 + 73727 0.67 0.852287
Target:  5'- aGAUUCagcaCCAUcaaugguaaacACCUU-GGCCCGCCGc -3'
miRNA:   3'- cCUAAGg---GGUA-----------UGGAGuCUGGGCGGC- -5'
32214 3' -56 NC_007016.1 + 119689 0.67 0.836177
Target:  5'- ----cCCCCcgGCCUguucucUAGugCCGCCGc -3'
miRNA:   3'- ccuaaGGGGuaUGGA------GUCugGGCGGC- -5'
32214 3' -56 NC_007016.1 + 121022 0.68 0.801791
Target:  5'- uGGA-UCCCgAagACCUCAGAaaCGCCa -3'
miRNA:   3'- -CCUaAGGGgUa-UGGAGUCUggGCGGc -5'
32214 3' -56 NC_007016.1 + 114821 0.69 0.774362
Target:  5'- gGGAggaCCCA-GCCUaCAGuCCCGCUGa -3'
miRNA:   3'- -CCUaagGGGUaUGGA-GUCuGGGCGGC- -5'
32214 3' -56 NC_007016.1 + 67105 0.7 0.716321
Target:  5'- gGGGUUCCCgGguuaaaACCcgCGGAgCCGCCa -3'
miRNA:   3'- -CCUAAGGGgUa-----UGGa-GUCUgGGCGGc -5'
32214 3' -56 NC_007016.1 + 27495 0.75 0.412448
Target:  5'- ----aCCCCAUGCCUCGGGacccCCUGCUGg -3'
miRNA:   3'- ccuaaGGGGUAUGGAGUCU----GGGCGGC- -5'
32214 3' -56 NC_007016.1 + 114628 1.11 0.001979
Target:  5'- gGGAUUCCCCAUACCUCAGACCCGCCGa -3'
miRNA:   3'- -CCUAAGGGGUAUGGAGUCUGGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.