miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32216 3' -53.8 NC_007016.1 + 47214 0.66 0.956471
Target:  5'- aACGGccGCGGau-CUuGUCGCUGCCa -3'
miRNA:   3'- cUGCCaaCGCUguuGGuUAGCGGCGG- -5'
32216 3' -53.8 NC_007016.1 + 91842 0.66 0.956471
Target:  5'- gGACGaGcUGCuGCAcACCAGg-GCCGCCg -3'
miRNA:   3'- -CUGC-CaACGcUGU-UGGUUagCGGCGG- -5'
32216 3' -53.8 NC_007016.1 + 26734 0.66 0.956471
Target:  5'- gGACGGUcaguucugGUGGCGguauCCAcgagggAUaCGCCGCCg -3'
miRNA:   3'- -CUGCCAa-------CGCUGUu---GGU------UA-GCGGCGG- -5'
32216 3' -53.8 NC_007016.1 + 15755 0.66 0.956471
Target:  5'- aGGCGGcgGCGcggcuguuguGCAAgCGAcCGCCGCa -3'
miRNA:   3'- -CUGCCaaCGC----------UGUUgGUUaGCGGCGg -5'
32216 3' -53.8 NC_007016.1 + 17867 0.66 0.952484
Target:  5'- -uCGGUcaccGCGACAACCcccuggacAUCGuacCCGCCg -3'
miRNA:   3'- cuGCCAa---CGCUGUUGGu-------UAGC---GGCGG- -5'
32216 3' -53.8 NC_007016.1 + 124763 0.66 0.952484
Target:  5'- cGACGGUUG-GACAucgcagaaGCUGAUCGaCCacggagGCCa -3'
miRNA:   3'- -CUGCCAACgCUGU--------UGGUUAGC-GG------CGG- -5'
32216 3' -53.8 NC_007016.1 + 39818 0.66 0.952484
Target:  5'- cAUGGUUGacugguccagcaCGugAGCCAcg-GCCGCCg -3'
miRNA:   3'- cUGCCAAC------------GCugUUGGUuagCGGCGG- -5'
32216 3' -53.8 NC_007016.1 + 46920 0.66 0.952484
Target:  5'- aGAgGGUUGCacgcgGAC-ACUggUCGCguaGCCg -3'
miRNA:   3'- -CUgCCAACG-----CUGuUGGuuAGCGg--CGG- -5'
32216 3' -53.8 NC_007016.1 + 104602 0.66 0.948258
Target:  5'- gGAUGGgUGUGAgGAgccCCA--UGCCGCCg -3'
miRNA:   3'- -CUGCCaACGCUgUU---GGUuaGCGGCGG- -5'
32216 3' -53.8 NC_007016.1 + 96488 0.66 0.948258
Target:  5'- -cCGGUgaccagGCGACgGGCCAGUuCGUCGgCg -3'
miRNA:   3'- cuGCCAa-----CGCUG-UUGGUUA-GCGGCgG- -5'
32216 3' -53.8 NC_007016.1 + 115917 0.66 0.948258
Target:  5'- cGCGGgggGUGAUAuguuCUGAUgacCGCCGCCu -3'
miRNA:   3'- cUGCCaa-CGCUGUu---GGUUA---GCGGCGG- -5'
32216 3' -53.8 NC_007016.1 + 30741 0.66 0.947822
Target:  5'- uGACGGUcGCGA--AUCAAUguaaacaCGCCGCg -3'
miRNA:   3'- -CUGCCAaCGCUguUGGUUA-------GCGGCGg -5'
32216 3' -53.8 NC_007016.1 + 26364 0.66 0.943791
Target:  5'- -cCGGUgGCucCAGCCcc-CGCCGCCc -3'
miRNA:   3'- cuGCCAaCGcuGUUGGuuaGCGGCGG- -5'
32216 3' -53.8 NC_007016.1 + 72499 0.66 0.943791
Target:  5'- -uUGGUcGCGucgacgguCAGCCccuUUGCCGCCa -3'
miRNA:   3'- cuGCCAaCGCu-------GUUGGuu-AGCGGCGG- -5'
32216 3' -53.8 NC_007016.1 + 103032 0.66 0.943791
Target:  5'- aGGCGGU--CGGC-ACC-AUCGCCGUUc -3'
miRNA:   3'- -CUGCCAacGCUGuUGGuUAGCGGCGG- -5'
32216 3' -53.8 NC_007016.1 + 18389 0.66 0.943791
Target:  5'- aGACGGUguUGaCGGCGcugaGCUggUUGUCGUCc -3'
miRNA:   3'- -CUGCCA--AC-GCUGU----UGGuuAGCGGCGG- -5'
32216 3' -53.8 NC_007016.1 + 116529 0.66 0.939079
Target:  5'- uGCGGggGuCGucauACGGCCcAUCGgCGCCa -3'
miRNA:   3'- cUGCCaaC-GC----UGUUGGuUAGCgGCGG- -5'
32216 3' -53.8 NC_007016.1 + 22826 0.66 0.939079
Target:  5'- cGGCaGGUggcgccGCGAgaGACCGAgCGCCGCg -3'
miRNA:   3'- -CUG-CCAa-----CGCUg-UUGGUUaGCGGCGg -5'
32216 3' -53.8 NC_007016.1 + 116960 0.67 0.93412
Target:  5'- --aGGUUGUGGCcGCCAA-CGCacccgguuaaCGCCg -3'
miRNA:   3'- cugCCAACGCUGuUGGUUaGCG----------GCGG- -5'
32216 3' -53.8 NC_007016.1 + 45334 0.67 0.928914
Target:  5'- cACGGUUGUGGCGugCccgUGCuacCGCCu -3'
miRNA:   3'- cUGCCAACGCUGUugGuuaGCG---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.