miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32216 5' -60.7 NC_007016.1 + 17033 0.66 0.633325
Target:  5'- ----aGGCUCaGGCaGGCCAccggaucggccGUGGGAAa -3'
miRNA:   3'- aacugCCGAG-CCGcCCGGU-----------UACCCUU- -5'
32216 5' -60.7 NC_007016.1 + 114173 0.66 0.612848
Target:  5'- gUGGCGGCUCcGgGuGGCUccgGGUGGGGu -3'
miRNA:   3'- aACUGCCGAGcCgC-CCGG---UUACCCUu -5'
32216 5' -60.7 NC_007016.1 + 114145 0.66 0.612848
Target:  5'- gUGGCGGCUCcGgGuGGCUccgGGUGGGGu -3'
miRNA:   3'- aACUGCCGAGcCgC-CCGG---UUACCCUu -5'
32216 5' -60.7 NC_007016.1 + 130356 0.66 0.602627
Target:  5'- -gGGCGcCUCGGCGGGgCCGGccccGGGGc -3'
miRNA:   3'- aaCUGCcGAGCCGCCC-GGUUa---CCCUu -5'
32216 5' -60.7 NC_007016.1 + 13261 0.66 0.59141
Target:  5'- --cGCGGCUCuGGCGGGCgGcaaguacaggcguAUGGGu- -3'
miRNA:   3'- aacUGCCGAG-CCGCCCGgU-------------UACCCuu -5'
32216 5' -60.7 NC_007016.1 + 125675 0.67 0.556001
Target:  5'- cUGACGGCguagUGGCguaaaauccacacaGGGCCGAUcuaaugucgcccccGGGAAg -3'
miRNA:   3'- aACUGCCGa---GCCG--------------CCCGGUUA--------------CCCUU- -5'
32216 5' -60.7 NC_007016.1 + 22776 0.67 0.55199
Target:  5'- -gGACGGCggccaccuggCGGCGGGCCAGa----- -3'
miRNA:   3'- aaCUGCCGa---------GCCGCCCGGUUacccuu -5'
32216 5' -60.7 NC_007016.1 + 99361 0.68 0.47408
Target:  5'- ---cCGGCgaucgCGGCGGGCU--UGGGAu -3'
miRNA:   3'- aacuGCCGa----GCCGCCCGGuuACCCUu -5'
32216 5' -60.7 NC_007016.1 + 67269 0.69 0.419426
Target:  5'- gUGGCGGCUCcGCGGGUUuuaacccGGGAAc -3'
miRNA:   3'- aACUGCCGAGcCGCCCGGuua----CCCUU- -5'
32216 5' -60.7 NC_007016.1 + 22868 0.69 0.410693
Target:  5'- -aGAUGGCggacCGGCGGcGCCGAUuGGGc- -3'
miRNA:   3'- aaCUGCCGa---GCCGCC-CGGUUA-CCCuu -5'
32216 5' -60.7 NC_007016.1 + 115345 1.04 0.001613
Target:  5'- aUUGACGGCUCGGCGGGCCAAUGGGAAa -3'
miRNA:   3'- -AACUGCCGAGCCGCCCGGUUACCCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.