miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32217 5' -56.9 NC_007016.1 + 66687 0.66 0.799805
Target:  5'- -cGCCCGUUccacUCUCAgGGUugCCGCUUGg -3'
miRNA:   3'- cuCGGGUAA----AGGGUgCCG--GGCGAAUa -5'
32217 5' -56.9 NC_007016.1 + 70887 0.66 0.781196
Target:  5'- -cGCCCGaggUCCCGCGcagcGCCCGUg--- -3'
miRNA:   3'- cuCGGGUaa-AGGGUGC----CGGGCGaaua -5'
32217 5' -56.9 NC_007016.1 + 76190 0.66 0.781196
Target:  5'- gGAGCCagaaccgUCCACGGCaCCGCa--- -3'
miRNA:   3'- -CUCGGguaaa--GGGUGCCG-GGCGaaua -5'
32217 5' -56.9 NC_007016.1 + 18067 0.67 0.771678
Target:  5'- cAGCaCCAg--CUCGCGGUCCGCg--- -3'
miRNA:   3'- cUCG-GGUaaaGGGUGCCGGGCGaaua -5'
32217 5' -56.9 NC_007016.1 + 130211 0.67 0.762029
Target:  5'- cGAGCCCGgggCCCcacaagccGCGGCgCGCg--- -3'
miRNA:   3'- -CUCGGGUaaaGGG--------UGCCGgGCGaaua -5'
32217 5' -56.9 NC_007016.1 + 38018 0.67 0.748322
Target:  5'- aGGGCCCuguucuucugCCCGCGuGuCCCGCUa-- -3'
miRNA:   3'- -CUCGGGuaaa------GGGUGC-C-GGGCGAaua -5'
32217 5' -56.9 NC_007016.1 + 118202 0.67 0.742381
Target:  5'- uGGCCCAcgaaacguccUUUguaacaUCCACGGCCUGCUa-- -3'
miRNA:   3'- cUCGGGU----------AAA------GGGUGCCGGGCGAaua -5'
32217 5' -56.9 NC_007016.1 + 92560 0.68 0.71218
Target:  5'- gGAGCCCg---CgCAcCGGCCCGCUc-- -3'
miRNA:   3'- -CUCGGGuaaaGgGU-GCCGGGCGAaua -5'
32217 5' -56.9 NC_007016.1 + 46639 0.68 0.71218
Target:  5'- cAGUCCGga--CCACGGCCCGgaUGg -3'
miRNA:   3'- cUCGGGUaaagGGUGCCGGGCgaAUa -5'
32217 5' -56.9 NC_007016.1 + 103913 0.68 0.701958
Target:  5'- aGGCCCAggUCCaaaACGGCCCa----- -3'
miRNA:   3'- cUCGGGUaaAGGg--UGCCGGGcgaaua -5'
32217 5' -56.9 NC_007016.1 + 14206 0.69 0.66055
Target:  5'- gGGGCCag--UCgCUGCGGUCCGCUUGa -3'
miRNA:   3'- -CUCGGguaaAG-GGUGCCGGGCGAAUa -5'
32217 5' -56.9 NC_007016.1 + 21818 0.69 0.629211
Target:  5'- -cGUCCAUUaauaCCCGCGGCCCGg---- -3'
miRNA:   3'- cuCGGGUAAa---GGGUGCCGGGCgaaua -5'
32217 5' -56.9 NC_007016.1 + 8244 0.69 0.618757
Target:  5'- -cGUCUg--UCCCGCGGCUCGCUUu- -3'
miRNA:   3'- cuCGGGuaaAGGGUGCCGGGCGAAua -5'
32217 5' -56.9 NC_007016.1 + 130025 0.7 0.566805
Target:  5'- cGGCCCGgg-CCCGCGGCcgCCGCc--- -3'
miRNA:   3'- cUCGGGUaaaGGGUGCCG--GGCGaaua -5'
32217 5' -56.9 NC_007016.1 + 115521 0.7 0.55653
Target:  5'- aGGGCCgccggcagggaCGUUUCCCAuUGGCCCGCc--- -3'
miRNA:   3'- -CUCGG-----------GUAAAGGGU-GCCGGGCGaaua -5'
32217 5' -56.9 NC_007016.1 + 21470 0.72 0.476777
Target:  5'- uGGGCCCGUaacgcUUgCCGCGGgCCGCUg-- -3'
miRNA:   3'- -CUCGGGUA-----AAgGGUGCCgGGCGAaua -5'
32217 5' -56.9 NC_007016.1 + 115677 1.06 0.002463
Target:  5'- cGAGCCCAUUUCCCACGGCCCGCUUAUg -3'
miRNA:   3'- -CUCGGGUAAAGGGUGCCGGGCGAAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.