miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32218 3' -58.5 NC_007016.1 + 63128 0.66 0.792507
Target:  5'- uAUGUUcuugUCGGacccuccaagGAcCCCGCCGGCcacuCCCa -3'
miRNA:   3'- -UACAA----AGCCa---------CU-GGGCGGCCGcu--GGG- -5'
32218 3' -58.5 NC_007016.1 + 17747 0.66 0.792507
Target:  5'- -gGUcUCcGUG-UCUGCCGGCGugCCc -3'
miRNA:   3'- uaCAaAGcCACuGGGCGGCCGCugGG- -5'
32218 3' -58.5 NC_007016.1 + 115464 0.66 0.783466
Target:  5'- -cGgcUCGGUguGACCUcCCcGCGACCCc -3'
miRNA:   3'- uaCaaAGCCA--CUGGGcGGcCGCUGGG- -5'
32218 3' -58.5 NC_007016.1 + 105396 0.67 0.75558
Target:  5'- uUGgUUCGGUGACuuGgCCGGaGGCUg -3'
miRNA:   3'- uACaAAGCCACUGggC-GGCCgCUGGg -5'
32218 3' -58.5 NC_007016.1 + 130124 0.67 0.75558
Target:  5'- -cGg--CGGcGcCCCGCuCGGgGGCCCg -3'
miRNA:   3'- uaCaaaGCCaCuGGGCG-GCCgCUGGG- -5'
32218 3' -58.5 NC_007016.1 + 22584 0.67 0.746059
Target:  5'- --cUUUCGGUG-CCCuCCGaaCGACCCg -3'
miRNA:   3'- uacAAAGCCACuGGGcGGCc-GCUGGG- -5'
32218 3' -58.5 NC_007016.1 + 22780 0.67 0.736442
Target:  5'- --uUUUCGGUG-CCCuCCGaaCGACCCg -3'
miRNA:   3'- uacAAAGCCACuGGGcGGCc-GCUGGG- -5'
32218 3' -58.5 NC_007016.1 + 116131 0.67 0.726735
Target:  5'- ----cUCGGUGGCCgggcagagGCCGGcCGGCCa -3'
miRNA:   3'- uacaaAGCCACUGGg-------CGGCC-GCUGGg -5'
32218 3' -58.5 NC_007016.1 + 91665 0.67 0.715967
Target:  5'- -----aUGGUGuuguacaGCaaGCCGGCGGCCCu -3'
miRNA:   3'- uacaaaGCCAC-------UGggCGGCCGCUGGG- -5'
32218 3' -58.5 NC_007016.1 + 31701 0.68 0.657053
Target:  5'- -gGUUgcaGGUugcGACCgaUGCCGGCGGCCg -3'
miRNA:   3'- uaCAAag-CCA---CUGG--GCGGCCGCUGGg -5'
32218 3' -58.5 NC_007016.1 + 130270 0.69 0.606517
Target:  5'- -cGgagCGG-GACCCGggGGCGGCCCc -3'
miRNA:   3'- uaCaaaGCCaCUGGGCggCCGCUGGG- -5'
32218 3' -58.5 NC_007016.1 + 115816 0.7 0.556436
Target:  5'- aAUGggcUCGGUGGggCGCCGGCGccaccauguGCCCg -3'
miRNA:   3'- -UACaa-AGCCACUggGCGGCCGC---------UGGG- -5'
32218 3' -58.5 NC_007016.1 + 117566 0.71 0.479205
Target:  5'- -----aCGGggaaaGCCCGCCGGUGACCg -3'
miRNA:   3'- uacaaaGCCac---UGGGCGGCCGCUGGg -5'
32218 3' -58.5 NC_007016.1 + 22755 0.71 0.479205
Target:  5'- -gGUUUCGGUaauGACgCGCCuggacGGCGGCCa -3'
miRNA:   3'- uaCAAAGCCA---CUGgGCGG-----CCGCUGGg -5'
32218 3' -58.5 NC_007016.1 + 84251 0.72 0.441693
Target:  5'- uAUGg--CGuGUGcugcgccAUCUGCCGGCGACCCg -3'
miRNA:   3'- -UACaaaGC-CAC-------UGGGCGGCCGCUGGG- -5'
32218 3' -58.5 NC_007016.1 + 115350 0.73 0.411024
Target:  5'- -cGgcUCGGcgGGCCaaugggaaacgucccUGCCGGCGGCCCu -3'
miRNA:   3'- uaCaaAGCCa-CUGG---------------GCGGCCGCUGGG- -5'
32218 3' -58.5 NC_007016.1 + 76645 0.73 0.388288
Target:  5'- aGUGcUUUCaGGUGuGCCUGCCGGCgccgccgccgcugcGACCCg -3'
miRNA:   3'- -UAC-AAAG-CCAC-UGGGCGGCCG--------------CUGGG- -5'
32218 3' -58.5 NC_007016.1 + 22686 0.76 0.273257
Target:  5'- -gGUUUCGGUGACgCGCggagcagaGGCGGCCg -3'
miRNA:   3'- uaCAAAGCCACUGgGCGg-------CCGCUGGg -5'
32218 3' -58.5 NC_007016.1 + 115608 0.79 0.176819
Target:  5'- cAUGUUUCGGUGACCC-CCGcCuGACCCc -3'
miRNA:   3'- -UACAAAGCCACUGGGcGGCcG-CUGGG- -5'
32218 3' -58.5 NC_007016.1 + 115877 0.79 0.168204
Target:  5'- --uUUUC-GUGACCCGCgGGUGACCCg -3'
miRNA:   3'- uacAAAGcCACUGGGCGgCCGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.