miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32218 5' -54.9 NC_007016.1 + 129960 0.66 0.915965
Target:  5'- ---cGCgGCCCCc-GGGCccCCGAGCGg -3'
miRNA:   3'- uuuuUGgCGGGGcaCCCGu-GGUUUGC- -5'
32218 5' -54.9 NC_007016.1 + 17403 0.66 0.915965
Target:  5'- ----cCUGCCCCGUGGuGCgaguaagcuccGCCGacGACGc -3'
miRNA:   3'- uuuuuGGCGGGGCACC-CG-----------UGGU--UUGC- -5'
32218 5' -54.9 NC_007016.1 + 78609 0.66 0.915965
Target:  5'- --uGACCGCCCCGgc--CACCGAGgCGu -3'
miRNA:   3'- uuuUUGGCGGGGCacccGUGGUUU-GC- -5'
32218 5' -54.9 NC_007016.1 + 20544 0.66 0.915965
Target:  5'- uGGGGACCGCCgCGaGGGCgaccugggGCCGGuguACGg -3'
miRNA:   3'- -UUUUUGGCGGgGCaCCCG--------UGGUU---UGC- -5'
32218 5' -54.9 NC_007016.1 + 17657 0.66 0.915965
Target:  5'- cGAGACCaCCCCG-GGGagACCGAcCGg -3'
miRNA:   3'- uUUUUGGcGGGGCaCCCg-UGGUUuGC- -5'
32218 5' -54.9 NC_007016.1 + 123568 0.66 0.909904
Target:  5'- -----gCGCCCCGcuccccaGGGCGCUGAugGc -3'
miRNA:   3'- uuuuugGCGGGGCa------CCCGUGGUUugC- -5'
32218 5' -54.9 NC_007016.1 + 103126 0.66 0.909904
Target:  5'- --cGGCCGUCCuCGU-GGCGCgAAGCa -3'
miRNA:   3'- uuuUUGGCGGG-GCAcCCGUGgUUUGc -5'
32218 5' -54.9 NC_007016.1 + 9769 0.66 0.903595
Target:  5'- -cGGACCGCCaCCGUcGcGGCgACCGcggcaAGCGa -3'
miRNA:   3'- uuUUUGGCGG-GGCA-C-CCG-UGGU-----UUGC- -5'
32218 5' -54.9 NC_007016.1 + 17884 0.66 0.903595
Target:  5'- cGGAGACCGCUCCGUGacGCACa--GCu -3'
miRNA:   3'- -UUUUUGGCGGGGCACc-CGUGguuUGc -5'
32218 5' -54.9 NC_007016.1 + 18163 0.66 0.89704
Target:  5'- uAGAAACa-CCCCGggcgGGcGCACCAcaguGACGa -3'
miRNA:   3'- -UUUUUGgcGGGGCa---CC-CGUGGU----UUGC- -5'
32218 5' -54.9 NC_007016.1 + 8007 0.67 0.885341
Target:  5'- -----aCGCCCCGUGGcggcgaccggcugacGCGCCGucguuugGACGg -3'
miRNA:   3'- uuuuugGCGGGGCACC---------------CGUGGU-------UUGC- -5'
32218 5' -54.9 NC_007016.1 + 16334 0.67 0.875935
Target:  5'- aGAGGAUgGCCaCCGUGGuGUccgcguuguuGCCAAACa -3'
miRNA:   3'- -UUUUUGgCGG-GGCACC-CG----------UGGUUUGc -5'
32218 5' -54.9 NC_007016.1 + 70805 0.67 0.868436
Target:  5'- --uAACC-CCCUGUGGGCcaugGCCGGAa- -3'
miRNA:   3'- uuuUUGGcGGGGCACCCG----UGGUUUgc -5'
32218 5' -54.9 NC_007016.1 + 31616 0.67 0.860714
Target:  5'- --uGAUCGauuuCCCGUGGGUGCCuuGCu -3'
miRNA:   3'- uuuUUGGCg---GGGCACCCGUGGuuUGc -5'
32218 5' -54.9 NC_007016.1 + 117945 0.67 0.852774
Target:  5'- ----uCCGCCUgGUGGGC-CCuGGCa -3'
miRNA:   3'- uuuuuGGCGGGgCACCCGuGGuUUGc -5'
32218 5' -54.9 NC_007016.1 + 115691 0.67 0.844625
Target:  5'- -----aCGgCCCGcuuaUGGGCACCAAAUa -3'
miRNA:   3'- uuuuugGCgGGGC----ACCCGUGGUUUGc -5'
32218 5' -54.9 NC_007016.1 + 22480 0.67 0.844625
Target:  5'- ----uCCGCaCCCaGgcaggGGGCGCCAcGCGg -3'
miRNA:   3'- uuuuuGGCG-GGG-Ca----CCCGUGGUuUGC- -5'
32218 5' -54.9 NC_007016.1 + 107772 0.68 0.836273
Target:  5'- cGGGGGuuGCCCCcccaGGCACCGAGCc -3'
miRNA:   3'- -UUUUUggCGGGGcac-CCGUGGUUUGc -5'
32218 5' -54.9 NC_007016.1 + 130115 0.68 0.836273
Target:  5'- cGGGGCCGCCCCc-GGGUcccgcuccGCCGGGCc -3'
miRNA:   3'- uUUUUGGCGGGGcaCCCG--------UGGUUUGc -5'
32218 5' -54.9 NC_007016.1 + 30360 0.68 0.827725
Target:  5'- cAGAGCCGCgCCGagaGGGCACgaAAACu -3'
miRNA:   3'- uUUUUGGCGgGGCa--CCCGUGg-UUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.