Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32219 | 5' | -52.2 | NC_007016.1 | + | 130465 | 0.66 | 0.973753 |
Target: 5'- gGCGGCGcGgagaccaccuuUCGGGGCGACGUGg-- -3' miRNA: 3'- gCGUCGC-Cac---------AGUCCCGUUGUAUaag -5' |
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32219 | 5' | -52.2 | NC_007016.1 | + | 52612 | 0.66 | 0.965099 |
Target: 5'- uGCAcacacGUGGUGUCGGucgugcGGguGCAUGUUUa -3' miRNA: 3'- gCGU-----CGCCACAGUC------CCguUGUAUAAG- -5' |
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32219 | 5' | -52.2 | NC_007016.1 | + | 110789 | 0.66 | 0.965099 |
Target: 5'- uCGUGGCGGcgcGUUAGGGCGgaaaaaaacuGCGUGUc- -3' miRNA: 3'- -GCGUCGCCa--CAGUCCCGU----------UGUAUAag -5' |
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32219 | 5' | -52.2 | NC_007016.1 | + | 62306 | 0.66 | 0.964757 |
Target: 5'- aGCGGCGGUGUCcgugccgccuguaAGaGGCAcGCAUc--- -3' miRNA: 3'- gCGUCGCCACAG-------------UC-CCGU-UGUAuaag -5' |
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32219 | 5' | -52.2 | NC_007016.1 | + | 126062 | 0.68 | 0.935214 |
Target: 5'- uGC-GCcaaGUGUCAGGGCGGCAa---- -3' miRNA: 3'- gCGuCGc--CACAGUCCCGUUGUauaag -5' |
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32219 | 5' | -52.2 | NC_007016.1 | + | 115956 | 0.89 | 0.094311 |
Target: 5'- uCGCAGCGGUGUCAGcGG-AACAUAUUCu -3' miRNA: 3'- -GCGUCGCCACAGUC-CCgUUGUAUAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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