miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32220 3' -57.1 NC_007016.1 + 17479 0.66 0.860047
Target:  5'- cUCCAUUGACgCGUucacaAUCC-CGGUcGGUCu -3'
miRNA:   3'- uGGGUAACUG-GCG-----UAGGaGCCA-CCGG- -5'
32220 3' -57.1 NC_007016.1 + 7978 0.66 0.844328
Target:  5'- gGCgCGggugGACCGCAaCCU--GUGGCCg -3'
miRNA:   3'- -UGgGUaa--CUGGCGUaGGAgcCACCGG- -5'
32220 3' -57.1 NC_007016.1 + 116309 0.66 0.836177
Target:  5'- gACCCcgcGAUCGCAcCUUUGGccGGCCg -3'
miRNA:   3'- -UGGGuaaCUGGCGUaGGAGCCa-CCGG- -5'
32220 3' -57.1 NC_007016.1 + 11876 0.66 0.831196
Target:  5'- gACCCGUUuGCCGCGUguguaucagacagcuUCUuaaUGGUGGCg -3'
miRNA:   3'- -UGGGUAAcUGGCGUA---------------GGA---GCCACCGg -5'
32220 3' -57.1 NC_007016.1 + 30909 0.66 0.822751
Target:  5'- gGCCCAaggUGuCCGCGUUCUCGGcuagacucaauauguUGGaCg -3'
miRNA:   3'- -UGGGUa--ACuGGCGUAGGAGCC---------------ACCgG- -5'
32220 3' -57.1 NC_007016.1 + 117460 0.66 0.816736
Target:  5'- gACCCAUguucCCGCAUaagcggauaguggaCCUUGGUcGCCa -3'
miRNA:   3'- -UGGGUAacu-GGCGUA--------------GGAGCCAcCGG- -5'
32220 3' -57.1 NC_007016.1 + 108203 0.67 0.810638
Target:  5'- gGCUCcgUGGcCCGCc-CCUCGG-GGUCg -3'
miRNA:   3'- -UGGGuaACU-GGCGuaGGAGCCaCCGG- -5'
32220 3' -57.1 NC_007016.1 + 121230 0.67 0.810638
Target:  5'- gGCCCAggGGCCGCG-CCga---GGCCa -3'
miRNA:   3'- -UGGGUaaCUGGCGUaGGagccaCCGG- -5'
32220 3' -57.1 NC_007016.1 + 88558 0.67 0.783644
Target:  5'- cACCgGUUGcauaccCUGCAUaCCUCGGUG-CCa -3'
miRNA:   3'- -UGGgUAACu-----GGCGUA-GGAGCCACcGG- -5'
32220 3' -57.1 NC_007016.1 + 11012 0.67 0.783644
Target:  5'- uGCCUucuugGugCGUuuuGUCCUCGGUG-CCa -3'
miRNA:   3'- -UGGGuaa--CugGCG---UAGGAGCCACcGG- -5'
32220 3' -57.1 NC_007016.1 + 117604 0.67 0.774362
Target:  5'- aACCCucacGGCCGCggCCgagUCGGUuGCCa -3'
miRNA:   3'- -UGGGuaa-CUGGCGuaGG---AGCCAcCGG- -5'
32220 3' -57.1 NC_007016.1 + 131190 0.67 0.774362
Target:  5'- gGCUCGggucCCGUGUCCUCGuGUGGaCCc -3'
miRNA:   3'- -UGGGUaacuGGCGUAGGAGC-CACC-GG- -5'
32220 3' -57.1 NC_007016.1 + 70983 0.68 0.726228
Target:  5'- cCCCGUccgcacUGGCCGUgauuccgCCUCuGGUGGUCu -3'
miRNA:   3'- uGGGUA------ACUGGCGua-----GGAG-CCACCGG- -5'
32220 3' -57.1 NC_007016.1 + 15406 0.68 0.726228
Target:  5'- aACCCGUaaACCGCGUuacaggucaCCUUGaUGGCCa -3'
miRNA:   3'- -UGGGUAacUGGCGUA---------GGAGCcACCGG- -5'
32220 3' -57.1 NC_007016.1 + 62726 0.68 0.716321
Target:  5'- uGCgCCAcUGACCGCu--UUUGGUGGUCa -3'
miRNA:   3'- -UG-GGUaACUGGCGuagGAGCCACCGG- -5'
32220 3' -57.1 NC_007016.1 + 68427 0.69 0.6963
Target:  5'- cGCCCuucgaucuuUUGuCUGCcacGUCCUCGcGUGGCUg -3'
miRNA:   3'- -UGGGu--------AACuGGCG---UAGGAGC-CACCGG- -5'
32220 3' -57.1 NC_007016.1 + 125735 0.69 0.686205
Target:  5'- cGCgCAccGGCaCGCcuGUCCUUGGUGGCUu -3'
miRNA:   3'- -UGgGUaaCUG-GCG--UAGGAGCCACCGG- -5'
32220 3' -57.1 NC_007016.1 + 123791 0.69 0.655684
Target:  5'- uCCCA--GACCcuCA-CUUCGGUGGCCg -3'
miRNA:   3'- uGGGUaaCUGGc-GUaGGAGCCACCGG- -5'
32220 3' -57.1 NC_007016.1 + 104429 0.69 0.654663
Target:  5'- aGCCCGUgggcUGuCCGUacucguacggcggGUgCUCGGUGGUCg -3'
miRNA:   3'- -UGGGUA----ACuGGCG-------------UAgGAGCCACCGG- -5'
32220 3' -57.1 NC_007016.1 + 115718 0.7 0.645462
Target:  5'- uACCCAUcGGCCGC-UCUUUGGcgccggGGUCa -3'
miRNA:   3'- -UGGGUAaCUGGCGuAGGAGCCa-----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.