miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32221 5' -50.3 NC_007016.1 + 97339 0.66 0.993086
Target:  5'- gGGACGGGAcccuGGU-CUGGUucGGCgGUCu -3'
miRNA:   3'- -CCUGUCCUu---UCAcGACCGuuCUG-UAG- -5'
32221 5' -50.3 NC_007016.1 + 104864 0.67 0.984514
Target:  5'- -cACGGGAccGUGCaaGGCAGGgAUAUCu -3'
miRNA:   3'- ccUGUCCUuuCACGa-CCGUUC-UGUAG- -5'
32221 5' -50.3 NC_007016.1 + 14884 0.67 0.975381
Target:  5'- gGGACAGGggGGUuaUcagGGCGcGACGg- -3'
miRNA:   3'- -CCUGUCCuuUCAcgA---CCGUuCUGUag -5'
32221 5' -50.3 NC_007016.1 + 17257 0.68 0.962827
Target:  5'- uGGGCAGGAcGGguccgGaCUGGCccAGGACuAUCu -3'
miRNA:   3'- -CCUGUCCUuUCa----C-GACCG--UUCUG-UAG- -5'
32221 5' -50.3 NC_007016.1 + 72821 0.68 0.959097
Target:  5'- cGGAUGGGAGGG-GUUGG-AGGACGcuUCg -3'
miRNA:   3'- -CCUGUCCUUUCaCGACCgUUCUGU--AG- -5'
32221 5' -50.3 NC_007016.1 + 119163 0.69 0.941631
Target:  5'- cGGGCGGGGAu-UGCggagggGGCGAGgACGUUg -3'
miRNA:   3'- -CCUGUCCUUucACGa-----CCGUUC-UGUAG- -5'
32221 5' -50.3 NC_007016.1 + 79032 0.73 0.821136
Target:  5'- aGAcCAGGGucGUGCUGGCAAcuacGACAg- -3'
miRNA:   3'- cCU-GUCCUuuCACGACCGUU----CUGUag -5'
32221 5' -50.3 NC_007016.1 + 116401 0.73 0.821136
Target:  5'- ---gGGGAAAGUGCUcaCAAGACAUCc -3'
miRNA:   3'- ccugUCCUUUCACGAccGUUCUGUAG- -5'
32221 5' -50.3 NC_007016.1 + 72442 0.73 0.783396
Target:  5'- gGGACGuGGggGGUGCUGaGCugcGGAC-UCu -3'
miRNA:   3'- -CCUGU-CCuuUCACGAC-CGu--UCUGuAG- -5'
32221 5' -50.3 NC_007016.1 + 47901 0.75 0.690625
Target:  5'- -cAUAGGGAAGUGcCUGGUAGGGCGg- -3'
miRNA:   3'- ccUGUCCUUUCAC-GACCGUUCUGUag -5'
32221 5' -50.3 NC_007016.1 + 125910 0.83 0.310354
Target:  5'- cGGACAGGugcAGGUGCgcuGCAGGACAUCc -3'
miRNA:   3'- -CCUGUCCu--UUCACGac-CGUUCUGUAG- -5'
32221 5' -50.3 NC_007016.1 + 116282 1.13 0.004076
Target:  5'- uGGACAGGAAAGUGCUGGCAAGACAUCg -3'
miRNA:   3'- -CCUGUCCUUUCACGACCGUUCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.