miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32222 3' -56 NC_007016.1 + 130217 0.66 0.904242
Target:  5'- aCCGaaa-GCGGCCCggcgCGCGGCGCGGGg -3'
miRNA:   3'- -GGCauacUGCUGGGg---GCGUUGCGCUU- -5'
32222 3' -56 NC_007016.1 + 20444 0.66 0.897857
Target:  5'- cCCGUGc-GCGuCCCaaauuuuuacgCCGCGGCGCGAc -3'
miRNA:   3'- -GGCAUacUGCuGGG-----------GGCGUUGCGCUu -5'
32222 3' -56 NC_007016.1 + 17603 0.66 0.891239
Target:  5'- cCCGgugucugGUGacGCGACgagaUCCCGCGGCGCGu- -3'
miRNA:   3'- -GGCa------UAC--UGCUG----GGGGCGUUGCGCuu -5'
32222 3' -56 NC_007016.1 + 81727 0.66 0.87003
Target:  5'- cCCGggAUGACGACCCgucUCGCAACa---- -3'
miRNA:   3'- -GGCa-UACUGCUGGG---GGCGUUGcgcuu -5'
32222 3' -56 NC_007016.1 + 130035 0.66 0.87003
Target:  5'- gCCGggcgccUGGgGGCCCCCGCcgGGCGCc-- -3'
miRNA:   3'- -GGCau----ACUgCUGGGGGCG--UUGCGcuu -5'
32222 3' -56 NC_007016.1 + 10084 0.66 0.869289
Target:  5'- gCCGUAUG-CGACgCCCCcccauacgcgcauGCAgaGCGCGu- -3'
miRNA:   3'- -GGCAUACuGCUG-GGGG-------------CGU--UGCGCuu -5'
32222 3' -56 NC_007016.1 + 15768 0.67 0.854809
Target:  5'- gCUGuUGUGcaaGCGACCgCCGC-ACGCGGu -3'
miRNA:   3'- -GGC-AUAC---UGCUGGgGGCGuUGCGCUu -5'
32222 3' -56 NC_007016.1 + 22572 0.67 0.854809
Target:  5'- gCCGUGc--CGACCccggCCCGCAaaacACGCGGAa -3'
miRNA:   3'- -GGCAUacuGCUGG----GGGCGU----UGCGCUU- -5'
32222 3' -56 NC_007016.1 + 90821 0.67 0.830474
Target:  5'- cUCGUGUGAUugUCCCCGUAA-GCGAu -3'
miRNA:   3'- -GGCAUACUGcuGGGGGCGUUgCGCUu -5'
32222 3' -56 NC_007016.1 + 53660 0.67 0.830474
Target:  5'- aCGgcagAUGGaacuGCCCCCGCGGCGCu-- -3'
miRNA:   3'- gGCa---UACUgc--UGGGGGCGUUGCGcuu -5'
32222 3' -56 NC_007016.1 + 6097 0.67 0.830474
Target:  5'- aUGUGUGACGACCCgucugccguuuuCgGCAGCGUcgugGAAa -3'
miRNA:   3'- gGCAUACUGCUGGG------------GgCGUUGCG----CUU- -5'
32222 3' -56 NC_007016.1 + 97311 0.68 0.804508
Target:  5'- uCUGUAUGuCGGuuagcggggcuCUCCCGCaAGCGCGAu -3'
miRNA:   3'- -GGCAUACuGCU-----------GGGGGCG-UUGCGCUu -5'
32222 3' -56 NC_007016.1 + 17751 0.68 0.795528
Target:  5'- uCCGUGUcugccGGCGugCCCCaGCAuCGgGAGa -3'
miRNA:   3'- -GGCAUA-----CUGCugGGGG-CGUuGCgCUU- -5'
32222 3' -56 NC_007016.1 + 22639 0.68 0.786399
Target:  5'- gCCGcGUGGCGcCCCCUGCcugggUGCGGAg -3'
miRNA:   3'- -GGCaUACUGCuGGGGGCGuu---GCGCUU- -5'
32222 3' -56 NC_007016.1 + 117700 0.68 0.786399
Target:  5'- cCCGUcccugGUGGCGGCCgCCUGC-GCGCu-- -3'
miRNA:   3'- -GGCA-----UACUGCUGG-GGGCGuUGCGcuu -5'
32222 3' -56 NC_007016.1 + 131181 0.68 0.77713
Target:  5'- cCCGUguccucGUGugGA-CCCUGCAACGCc-- -3'
miRNA:   3'- -GGCA------UACugCUgGGGGCGUUGCGcuu -5'
32222 3' -56 NC_007016.1 + 18109 0.7 0.688949
Target:  5'- uCCGUAUcGCGACaCCCGCGucguuCGCGGc -3'
miRNA:   3'- -GGCAUAcUGCUGgGGGCGUu----GCGCUu -5'
32222 3' -56 NC_007016.1 + 41522 0.7 0.668595
Target:  5'- uCCGaGUG-CGguACCCCCGCAACGUa-- -3'
miRNA:   3'- -GGCaUACuGC--UGGGGGCGUUGCGcuu -5'
32222 3' -56 NC_007016.1 + 130260 0.71 0.648122
Target:  5'- cCCGgg-GGCGGCCCCgGCccccCGCGGGa -3'
miRNA:   3'- -GGCauaCUGCUGGGGgCGuu--GCGCUU- -5'
32222 3' -56 NC_007016.1 + 116380 1.08 0.003145
Target:  5'- gCCGUAUGACGACCCCCGCAACGCGAAg -3'
miRNA:   3'- -GGCAUACUGCUGGGGGCGUUGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.