miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32222 5' -56 NC_007016.1 + 104489 0.66 0.909738
Target:  5'- aGCGGACA---CCCGGcguguuugaagccugGACCGG-CGUg -3'
miRNA:   3'- gCGCCUGUaaaGGGUC---------------UUGGCCgGCG- -5'
32222 5' -56 NC_007016.1 + 130093 0.66 0.909738
Target:  5'- gCGCGGGagacccucgcCCCGGGcgcaagauGgCGGCCGCg -3'
miRNA:   3'- -GCGCCUguaaa-----GGGUCU--------UgGCCGGCG- -5'
32222 5' -56 NC_007016.1 + 62684 0.66 0.907301
Target:  5'- uGCGGAUcuaUCCUAGGuggggaggagACCGGuuGUu -3'
miRNA:   3'- gCGCCUGuaaAGGGUCU----------UGGCCggCG- -5'
32222 5' -56 NC_007016.1 + 47232 0.66 0.901045
Target:  5'- -uCGGACcag-UCUAGAGauaaCGGCCGCg -3'
miRNA:   3'- gcGCCUGuaaaGGGUCUUg---GCCGGCG- -5'
32222 5' -56 NC_007016.1 + 130398 0.66 0.900407
Target:  5'- gGCGG-CGgccgCCCggcaucgGGAGCCGcgcGCCGCg -3'
miRNA:   3'- gCGCCuGUaaa-GGG-------UCUUGGC---CGGCG- -5'
32222 5' -56 NC_007016.1 + 120267 0.66 0.890552
Target:  5'- gCGCGGcggaacggaguuuccGCggUUCCCGGcAACaagguaagggGGCCGCg -3'
miRNA:   3'- -GCGCC---------------UGuaAAGGGUC-UUGg---------CCGGCG- -5'
32222 5' -56 NC_007016.1 + 126098 0.66 0.887837
Target:  5'- cCGCGGugAUgcUCCCguuacaacGGAACauauuaccguUGGCCGUa -3'
miRNA:   3'- -GCGCCugUAa-AGGG--------UCUUG----------GCCGGCG- -5'
32222 5' -56 NC_007016.1 + 47073 0.66 0.887837
Target:  5'- cCGCGGcCGUUaUCuCUAGAcugguccgauCCGGUCGCg -3'
miRNA:   3'- -GCGCCuGUAA-AG-GGUCUu---------GGCCGGCG- -5'
32222 5' -56 NC_007016.1 + 5704 0.66 0.887837
Target:  5'- uGCGGACA--UUCCAGAGgguuCCauauGCCGUg -3'
miRNA:   3'- gCGCCUGUaaAGGGUCUU----GGc---CGGCG- -5'
32222 5' -56 NC_007016.1 + 118307 0.66 0.880892
Target:  5'- gGCGGACuagagUCaacgCGGAAgCGGCUGUu -3'
miRNA:   3'- gCGCCUGuaa--AGg---GUCUUgGCCGGCG- -5'
32222 5' -56 NC_007016.1 + 22973 0.66 0.880892
Target:  5'- uCGCGG-CGcca-CCu--GCCGGCCGCu -3'
miRNA:   3'- -GCGCCuGUaaagGGucuUGGCCGGCG- -5'
32222 5' -56 NC_007016.1 + 29556 0.66 0.880185
Target:  5'- aCGCGGAUg--UCCgCAacguaucGGACacgcaGGCCGCg -3'
miRNA:   3'- -GCGCCUGuaaAGG-GU-------CUUGg----CCGGCG- -5'
32222 5' -56 NC_007016.1 + 22400 0.66 0.878765
Target:  5'- cCGCGGGCGUUcCgcguguuuugcgggCCGGggUCGGCaCGg -3'
miRNA:   3'- -GCGCCUGUAAaG--------------GGUCuuGGCCG-GCg -5'
32222 5' -56 NC_007016.1 + 130239 0.66 0.878052
Target:  5'- cCGCGGGacccccggcCCCGGAAccgaaagcggcCCGGCgCGCg -3'
miRNA:   3'- -GCGCCUguaaa----GGGUCUU-----------GGCCG-GCG- -5'
32222 5' -56 NC_007016.1 + 28506 0.67 0.866343
Target:  5'- uGuCGaGACGUUaacgCCGGAGCCGcuGCCGCa -3'
miRNA:   3'- gC-GC-CUGUAAag--GGUCUUGGC--CGGCG- -5'
32222 5' -56 NC_007016.1 + 91091 0.67 0.866343
Target:  5'- aCGCugaGGACGggggCCCuGccCUGGCCGCu -3'
miRNA:   3'- -GCG---CCUGUaaa-GGGuCuuGGCCGGCG- -5'
32222 5' -56 NC_007016.1 + 91204 0.67 0.865593
Target:  5'- aCGCGGGCG--UCCuCGGucuCCGGCUuaaaaauGCg -3'
miRNA:   3'- -GCGCCUGUaaAGG-GUCuu-GGCCGG-------CG- -5'
32222 5' -56 NC_007016.1 + 685 0.67 0.858749
Target:  5'- cCGcCGGGCAagcggCCCAGAucuGCCcggcaGGUCGCu -3'
miRNA:   3'- -GC-GCCUGUaaa--GGGUCU---UGG-----CCGGCG- -5'
32222 5' -56 NC_007016.1 + 17193 0.67 0.858749
Target:  5'- cCGCGGAaguccggguuCAguuaaucUUCCaacaGGGAgCGGCCGCu -3'
miRNA:   3'- -GCGCCU----------GUa------AAGGg---UCUUgGCCGGCG- -5'
32222 5' -56 NC_007016.1 + 115356 0.67 0.854094
Target:  5'- gGCGGGCcaaugggaaacgUCCCu--GCCGGCgGCc -3'
miRNA:   3'- gCGCCUGuaa---------AGGGucuUGGCCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.