miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32223 3' -60.5 NC_007016.1 + 93757 0.66 0.694452
Target:  5'- aGGUGG-CgCCCAAUCUCCUaaaacuauACGGUGc- -3'
miRNA:   3'- -CCACCuG-GGGUUGGGGGG--------UGCCACau -5'
32223 3' -60.5 NC_007016.1 + 115657 0.66 0.683579
Target:  5'- uGGUGGcgccggcGCCCCAccgaGCCCauuuCCCACGGc--- -3'
miRNA:   3'- -CCACC-------UGGGGU----UGGG----GGGUGCCacau -5'
32223 3' -60.5 NC_007016.1 + 56931 0.66 0.66469
Target:  5'- gGGUGGGuaagauacCCgCCAGCgCCCCAauUGGUGg- -3'
miRNA:   3'- -CCACCU--------GG-GGUUGgGGGGU--GCCACau -5'
32223 3' -60.5 NC_007016.1 + 116041 0.67 0.644709
Target:  5'- --gGGAuuaauuuuaauCCCCGACCCCCUuuaAUGGUGc- -3'
miRNA:   3'- ccaCCU-----------GGGGUUGGGGGG---UGCCACau -5'
32223 3' -60.5 NC_007016.1 + 20106 0.67 0.624691
Target:  5'- gGGaGGACCCCGcguCCUuuCCCGCGGUu-- -3'
miRNA:   3'- -CCaCCUGGGGUu--GGG--GGGUGCCAcau -5'
32223 3' -60.5 NC_007016.1 + 91605 0.67 0.604693
Target:  5'- --cGGugCCC-GCCCCCCaaACGcGUGUc -3'
miRNA:   3'- ccaCCugGGGuUGGGGGG--UGC-CACAu -5'
32223 3' -60.5 NC_007016.1 + 62708 0.67 0.59472
Target:  5'- uGGUGGuCaaCGGCCCgUCGCGGUGg- -3'
miRNA:   3'- -CCACCuGggGUUGGGgGGUGCCACau -5'
32223 3' -60.5 NC_007016.1 + 72791 0.69 0.52599
Target:  5'- ---cGACCCCAACCCCuuugcgCCGCGGUu-- -3'
miRNA:   3'- ccacCUGGGGUUGGGG------GGUGCCAcau -5'
32223 3' -60.5 NC_007016.1 + 130485 0.76 0.192251
Target:  5'- --cGGGCCCCAGCCCCCCuccCGGcGg- -3'
miRNA:   3'- ccaCCUGGGGUUGGGGGGu--GCCaCau -5'
32223 3' -60.5 NC_007016.1 + 130258 0.8 0.10249
Target:  5'- cGGggGcGGCCCCGGCCCCCCGCGGg--- -3'
miRNA:   3'- -CCa-C-CUGGGGUUGGGGGGUGCCacau -5'
32223 3' -60.5 NC_007016.1 + 118999 1.08 0.001212
Target:  5'- gGGUGGACCCCAACCCCCCACGGUGUAc -3'
miRNA:   3'- -CCACCUGGGGUUGGGGGGUGCCACAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.