miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32223 5' -56.5 NC_007016.1 + 116320 0.66 0.863623
Target:  5'- ----cGGUCGGGGAACGGGaGGcgcgCCg- -3'
miRNA:   3'- acauaCCGGUCCUUUGCCC-CCa---GGac -5'
32223 5' -56.5 NC_007016.1 + 27899 0.66 0.847924
Target:  5'- --gAUGGgUuaaGGGAGAUGGGGGUuUCUGa -3'
miRNA:   3'- acaUACCgG---UCCUUUGCCCCCA-GGAC- -5'
32223 5' -56.5 NC_007016.1 + 62958 0.66 0.847924
Target:  5'- --aGUGGCCGGcGggGuccuUGGaGGGUCCg- -3'
miRNA:   3'- acaUACCGGUC-CuuU----GCC-CCCAGGac -5'
32223 5' -56.5 NC_007016.1 + 68471 0.67 0.805309
Target:  5'- ----cGGucCCGGGAAugGGGGGUUuaCUGu -3'
miRNA:   3'- acauaCC--GGUCCUUugCCCCCAG--GAC- -5'
32223 5' -56.5 NC_007016.1 + 115774 0.67 0.777752
Target:  5'- uUGg--GGCgCGGGGucaGGCGGGGGUCa-- -3'
miRNA:   3'- -ACauaCCG-GUCCU---UUGCCCCCAGgac -5'
32223 5' -56.5 NC_007016.1 + 48355 0.68 0.768287
Target:  5'- cGUGcggGGCCAGGcacgcGACGGauGUCCUGg -3'
miRNA:   3'- aCAUa--CCGGUCCu----UUGCCccCAGGAC- -5'
32223 5' -56.5 NC_007016.1 + 14462 0.69 0.678675
Target:  5'- --cGUGGCgGGGGAG-GGGGGUUCa- -3'
miRNA:   3'- acaUACCGgUCCUUUgCCCCCAGGac -5'
32223 5' -56.5 NC_007016.1 + 26318 0.7 0.637424
Target:  5'- cUGUGaGGCguGGAGAUGGGuGUCCg- -3'
miRNA:   3'- -ACAUaCCGguCCUUUGCCCcCAGGac -5'
32223 5' -56.5 NC_007016.1 + 130090 0.7 0.616739
Target:  5'- cGg--GGCCGGGGGucccGCGGGGGgCCg- -3'
miRNA:   3'- aCauaCCGGUCCUU----UGCCCCCaGGac -5'
32223 5' -56.5 NC_007016.1 + 130149 0.71 0.565364
Target:  5'- cGgagGGCCGGGAGcCGGGGGaggCCg- -3'
miRNA:   3'- aCauaCCGGUCCUUuGCCCCCa--GGac -5'
32223 5' -56.5 NC_007016.1 + 118063 0.72 0.525076
Target:  5'- cGUG-GGCCAGGAGGuuagaaaGGGcccGGUCCUGg -3'
miRNA:   3'- aCAUaCCGGUCCUUUg------CCC---CCAGGAC- -5'
32223 5' -56.5 NC_007016.1 + 19076 0.73 0.485925
Target:  5'- uUGUGUGGCgAGGguACGGGaGGgggugUCUGg -3'
miRNA:   3'- -ACAUACCGgUCCuuUGCCC-CCa----GGAC- -5'
32223 5' -56.5 NC_007016.1 + 813 0.74 0.394852
Target:  5'- cGUggGGCCGGGGGACGGGGcGUggUUUGa -3'
miRNA:   3'- aCAuaCCGGUCCUUUGCCCC-CA--GGAC- -5'
32223 5' -56.5 NC_007016.1 + 119034 1.09 0.001971
Target:  5'- aUGUAUGGCCAGGAAACGGGGGUCCUGg -3'
miRNA:   3'- -ACAUACCGGUCCUUUGCCCCCAGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.