miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32224 3' -56.4 NC_007016.1 + 119644 0.66 0.886687
Target:  5'- uGCGGAGGC-UgGUgCgGCCGCGCcacGCc -3'
miRNA:   3'- -CGCCUUUGaGgCAaGgCGGCGCGu--CG- -5'
32224 3' -56.4 NC_007016.1 + 13285 0.66 0.879729
Target:  5'- cCGGguGCgcgaaUCGaUUgGCCGCGCGGCu -3'
miRNA:   3'- cGCCuuUGa----GGCaAGgCGGCGCGUCG- -5'
32224 3' -56.4 NC_007016.1 + 83070 0.66 0.879729
Target:  5'- aGCGGcagGAACUCCag-CCGUugucgccuacugCGCGCAGa -3'
miRNA:   3'- -CGCC---UUUGAGGcaaGGCG------------GCGCGUCg -5'
32224 3' -56.4 NC_007016.1 + 62306 0.66 0.872553
Target:  5'- aGCGGcGGugUCCGUgCCGCCuGUaagagGCAcGCa -3'
miRNA:   3'- -CGCC-UUugAGGCAaGGCGG-CG-----CGU-CG- -5'
32224 3' -56.4 NC_007016.1 + 8567 0.66 0.865161
Target:  5'- -aGGGAACUCgCGgcCUuauaCGCGCAGCu -3'
miRNA:   3'- cgCCUUUGAG-GCaaGGcg--GCGCGUCG- -5'
32224 3' -56.4 NC_007016.1 + 22949 0.66 0.865161
Target:  5'- cGCGGugcucgcguCUCUGgcCCGCCGCcagGUGGCc -3'
miRNA:   3'- -CGCCuuu------GAGGCaaGGCGGCG---CGUCG- -5'
32224 3' -56.4 NC_007016.1 + 15756 0.67 0.857562
Target:  5'- gGCGGcgGCgcggCUGUUgugcaagcgaCCGCCGCacGCGGUa -3'
miRNA:   3'- -CGCCuuUGa---GGCAA----------GGCGGCG--CGUCG- -5'
32224 3' -56.4 NC_007016.1 + 115917 0.67 0.857562
Target:  5'- cGCGGggGgugauaugUUCUGaugaCCGCCGCcuuacguucGCAGCg -3'
miRNA:   3'- -CGCCuuU--------GAGGCaa--GGCGGCG---------CGUCG- -5'
32224 3' -56.4 NC_007016.1 + 124193 0.67 0.857562
Target:  5'- aCGGggGCcaCCGUcugaugCUGuuGCGUGGCg -3'
miRNA:   3'- cGCCuuUGa-GGCAa-----GGCggCGCGUCG- -5'
32224 3' -56.4 NC_007016.1 + 102669 0.67 0.849759
Target:  5'- cGUGGAuuGGCggagCCGUUCgGCCGCcgagauGCuGGCc -3'
miRNA:   3'- -CGCCU--UUGa---GGCAAGgCGGCG------CG-UCG- -5'
32224 3' -56.4 NC_007016.1 + 118456 0.67 0.848968
Target:  5'- cGCGuuGACUCUagUCCGCCGCuuuccgggaacagGCAGg -3'
miRNA:   3'- -CGCcuUUGAGGcaAGGCGGCG-------------CGUCg -5'
32224 3' -56.4 NC_007016.1 + 88176 0.67 0.841761
Target:  5'- aUGGAGugaucuGCUCCGggugUgGUgGCGCGGCa -3'
miRNA:   3'- cGCCUU------UGAGGCaa--GgCGgCGCGUCG- -5'
32224 3' -56.4 NC_007016.1 + 130318 0.67 0.841761
Target:  5'- gGUGGu--CUCCGcgCCGCCGgGaggggGGCu -3'
miRNA:   3'- -CGCCuuuGAGGCaaGGCGGCgCg----UCG- -5'
32224 3' -56.4 NC_007016.1 + 65268 0.67 0.833573
Target:  5'- aGCgGGGAugUCCGgguggaaaCCaGCCGCGUuGCc -3'
miRNA:   3'- -CG-CCUUugAGGCaa------GG-CGGCGCGuCG- -5'
32224 3' -56.4 NC_007016.1 + 104595 0.67 0.833573
Target:  5'- uGUGaGGAGCcCCaugCCGCCGCGC-GCc -3'
miRNA:   3'- -CGC-CUUUGaGGcaaGGCGGCGCGuCG- -5'
32224 3' -56.4 NC_007016.1 + 107150 0.67 0.825202
Target:  5'- cGCGGGAuauCUCCGUcucgguugacUCC-CCuauGgGCAGCa -3'
miRNA:   3'- -CGCCUUu--GAGGCA----------AGGcGG---CgCGUCG- -5'
32224 3' -56.4 NC_007016.1 + 26213 0.67 0.825202
Target:  5'- gGCGGggGCUggagCCa--CCgGCUGCGUGGCa -3'
miRNA:   3'- -CGCCuuUGA----GGcaaGG-CGGCGCGUCG- -5'
32224 3' -56.4 NC_007016.1 + 20879 0.67 0.825202
Target:  5'- cGCGGA---UCCGagguugCCGCgGCGCGuGCc -3'
miRNA:   3'- -CGCCUuugAGGCaa----GGCGgCGCGU-CG- -5'
32224 3' -56.4 NC_007016.1 + 130238 0.67 0.81752
Target:  5'- cGCGGGAcccccgGCcCCGgaaccgaaagcggcCCGgCGCGCGGCg -3'
miRNA:   3'- -CGCCUU------UGaGGCaa------------GGCgGCGCGUCG- -5'
32224 3' -56.4 NC_007016.1 + 130239 0.67 0.816657
Target:  5'- cGCGGcucccGAUgCCGggcggCCGCCGCcCGGCa -3'
miRNA:   3'- -CGCCu----UUGaGGCaa---GGCGGCGcGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.