miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32224 5' -50.9 NC_007016.1 + 13550 0.66 0.985805
Target:  5'- -cGCCGAGguACCGA-GCCGCUUc---- -3'
miRNA:   3'- gaCGGCUU--UGGUUgCGGCGAAcuuaa -5'
32224 5' -50.9 NC_007016.1 + 88166 0.66 0.981882
Target:  5'- aUGUgGcuuCCAACGCCGCaUGAGa- -3'
miRNA:   3'- gACGgCuuuGGUUGCGGCGaACUUaa -5'
32224 5' -50.9 NC_007016.1 + 28465 0.66 0.981882
Target:  5'- -cGCCGGAauGCCGugGaCCGCgcGAAc- -3'
miRNA:   3'- gaCGGCUU--UGGUugC-GGCGaaCUUaa -5'
32224 5' -50.9 NC_007016.1 + 848 0.66 0.977198
Target:  5'- cCUGCCGGgcaGAUCuGgGCCGCUUGc--- -3'
miRNA:   3'- -GACGGCU---UUGGuUgCGGCGAACuuaa -5'
32224 5' -50.9 NC_007016.1 + 5076 0.67 0.971678
Target:  5'- aCUGUCGcuGgCGACGCUGCUaGAAa- -3'
miRNA:   3'- -GACGGCuuUgGUUGCGGCGAaCUUaa -5'
32224 5' -50.9 NC_007016.1 + 130335 0.67 0.971678
Target:  5'- -cGUCGggGCgCGGCGCCGCcgGGc-- -3'
miRNA:   3'- gaCGGCuuUG-GUUGCGGCGaaCUuaa -5'
32224 5' -50.9 NC_007016.1 + 126123 0.67 0.965256
Target:  5'- uUGCCGGAGagagacCCAauauGCGCCGCggUGAu-- -3'
miRNA:   3'- gACGGCUUU------GGU----UGCGGCGa-ACUuaa -5'
32224 5' -50.9 NC_007016.1 + 28492 0.7 0.898616
Target:  5'- -cGCCGGAGCCGcUGCCGCa------ -3'
miRNA:   3'- gaCGGCUUUGGUuGCGGCGaacuuaa -5'
32224 5' -50.9 NC_007016.1 + 9442 0.7 0.891635
Target:  5'- uCUGCCGAgGACCgGACGCCGUgcugcgUGGc-- -3'
miRNA:   3'- -GACGGCU-UUGG-UUGCGGCGa-----ACUuaa -5'
32224 5' -50.9 NC_007016.1 + 19483 0.71 0.835909
Target:  5'- -cGUCGAGuGCCAGCGCCGC--GAGUUu -3'
miRNA:   3'- gaCGGCUU-UGGUUGCGGCGaaCUUAA- -5'
32224 5' -50.9 NC_007016.1 + 84845 0.73 0.770047
Target:  5'- uUGCUGAcagAAUCAugGCCGCUggUGAAUc -3'
miRNA:   3'- gACGGCU---UUGGUugCGGCGA--ACUUAa -5'
32224 5' -50.9 NC_007016.1 + 76661 0.73 0.739536
Target:  5'- cCUGCCGgcGCCGcCGCCGCUg----- -3'
miRNA:   3'- -GACGGCuuUGGUuGCGGCGAacuuaa -5'
32224 5' -50.9 NC_007016.1 + 120149 1.05 0.011199
Target:  5'- gCUGCCGAAACCAACGCCGCUUGAAUUu -3'
miRNA:   3'- -GACGGCUUUGGUUGCGGCGAACUUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.