Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32224 | 5' | -50.9 | NC_007016.1 | + | 88166 | 0.66 | 0.981882 |
Target: 5'- aUGUgGcuuCCAACGCCGCaUGAGa- -3' miRNA: 3'- gACGgCuuuGGUUGCGGCGaACUUaa -5' |
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32224 | 5' | -50.9 | NC_007016.1 | + | 28465 | 0.66 | 0.981882 |
Target: 5'- -cGCCGGAauGCCGugGaCCGCgcGAAc- -3' miRNA: 3'- gaCGGCUU--UGGUugC-GGCGaaCUUaa -5' |
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32224 | 5' | -50.9 | NC_007016.1 | + | 13550 | 0.66 | 0.985805 |
Target: 5'- -cGCCGAGguACCGA-GCCGCUUc---- -3' miRNA: 3'- gaCGGCUU--UGGUUgCGGCGAAcuuaa -5' |
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32224 | 5' | -50.9 | NC_007016.1 | + | 848 | 0.66 | 0.977198 |
Target: 5'- cCUGCCGGgcaGAUCuGgGCCGCUUGc--- -3' miRNA: 3'- -GACGGCU---UUGGuUgCGGCGAACuuaa -5' |
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32224 | 5' | -50.9 | NC_007016.1 | + | 5076 | 0.67 | 0.971678 |
Target: 5'- aCUGUCGcuGgCGACGCUGCUaGAAa- -3' miRNA: 3'- -GACGGCuuUgGUUGCGGCGAaCUUaa -5' |
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32224 | 5' | -50.9 | NC_007016.1 | + | 130335 | 0.67 | 0.971678 |
Target: 5'- -cGUCGggGCgCGGCGCCGCcgGGc-- -3' miRNA: 3'- gaCGGCuuUG-GUUGCGGCGaaCUuaa -5' |
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32224 | 5' | -50.9 | NC_007016.1 | + | 126123 | 0.67 | 0.965256 |
Target: 5'- uUGCCGGAGagagacCCAauauGCGCCGCggUGAu-- -3' miRNA: 3'- gACGGCUUU------GGU----UGCGGCGa-ACUuaa -5' |
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32224 | 5' | -50.9 | NC_007016.1 | + | 28492 | 0.7 | 0.898616 |
Target: 5'- -cGCCGGAGCCGcUGCCGCa------ -3' miRNA: 3'- gaCGGCUUUGGUuGCGGCGaacuuaa -5' |
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32224 | 5' | -50.9 | NC_007016.1 | + | 9442 | 0.7 | 0.891635 |
Target: 5'- uCUGCCGAgGACCgGACGCCGUgcugcgUGGc-- -3' miRNA: 3'- -GACGGCU-UUGG-UUGCGGCGa-----ACUuaa -5' |
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32224 | 5' | -50.9 | NC_007016.1 | + | 19483 | 0.71 | 0.835909 |
Target: 5'- -cGUCGAGuGCCAGCGCCGC--GAGUUu -3' miRNA: 3'- gaCGGCUU-UGGUUGCGGCGaaCUUAA- -5' |
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32224 | 5' | -50.9 | NC_007016.1 | + | 84845 | 0.73 | 0.770047 |
Target: 5'- uUGCUGAcagAAUCAugGCCGCUggUGAAUc -3' miRNA: 3'- gACGGCU---UUGGUugCGGCGA--ACUUAa -5' |
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32224 | 5' | -50.9 | NC_007016.1 | + | 76661 | 0.73 | 0.739536 |
Target: 5'- cCUGCCGgcGCCGcCGCCGCUg----- -3' miRNA: 3'- -GACGGCuuUGGUuGCGGCGAacuuaa -5' |
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32224 | 5' | -50.9 | NC_007016.1 | + | 120149 | 1.05 | 0.011199 |
Target: 5'- gCUGCCGAAACCAACGCCGCUUGAAUUu -3' miRNA: 3'- -GACGGCUUUGGUUGCGGCGAACUUAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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