miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32225 5' -57 NC_007016.1 + 121962 0.66 0.85348
Target:  5'- -cGCCCGUGGgucaaGCAcUGGGCCuCCg -3'
miRNA:   3'- ucUGGGUACUaacg-CGUaGCCCGG-GG- -5'
32225 5' -57 NC_007016.1 + 116553 0.66 0.845523
Target:  5'- gAGAUCCcccg-UGCGCAUCGccGCCCUc -3'
miRNA:   3'- -UCUGGGuacuaACGCGUAGCc-CGGGG- -5'
32225 5' -57 NC_007016.1 + 130355 0.66 0.83737
Target:  5'- gGGGCCCcgGGcucgggGgGCGUCGGGgCgCg -3'
miRNA:   3'- -UCUGGGuaCUaa----CgCGUAGCCCgGgG- -5'
32225 5' -57 NC_007016.1 + 130121 0.66 0.83737
Target:  5'- cGcCCCcgGGUccCGCuccgcCGGGCCCCg -3'
miRNA:   3'- uCuGGGuaCUAacGCGua---GCCCGGGG- -5'
32225 5' -57 NC_007016.1 + 21493 0.66 0.82903
Target:  5'- aAGACCCccGGggccaaCGCgGUUGGGCCCg -3'
miRNA:   3'- -UCUGGGuaCUaac---GCG-UAGCCCGGGg -5'
32225 5' -57 NC_007016.1 + 126113 0.66 0.82903
Target:  5'- gAGACCCAaua-UGCGCcgCGGugauGCuCCCg -3'
miRNA:   3'- -UCUGGGUacuaACGCGuaGCC----CG-GGG- -5'
32225 5' -57 NC_007016.1 + 115646 0.66 0.820509
Target:  5'- -uACCCAUGG-UGCGCAUgaGGGCg-- -3'
miRNA:   3'- ucUGGGUACUaACGCGUAg-CCCGggg -5'
32225 5' -57 NC_007016.1 + 53932 0.66 0.820509
Target:  5'- uAGAgCCuUGAggaaggggUGCGUAuUCGGGCgCCu -3'
miRNA:   3'- -UCUgGGuACUa-------ACGCGU-AGCCCGgGG- -5'
32225 5' -57 NC_007016.1 + 21314 0.66 0.820509
Target:  5'- cGGCCCGcGGcaaGCGUuaCGGGCCCa -3'
miRNA:   3'- uCUGGGUaCUaa-CGCGuaGCCCGGGg -5'
32225 5' -57 NC_007016.1 + 51828 0.67 0.793945
Target:  5'- uGAUCUAgcauacGCGCcugCGGGCCCCc -3'
miRNA:   3'- uCUGGGUacuaa-CGCGua-GCCCGGGG- -5'
32225 5' -57 NC_007016.1 + 129969 0.67 0.793945
Target:  5'- cGGGCCCccGAgcgggGCGCcgCcGGCCUCc -3'
miRNA:   3'- -UCUGGGuaCUaa---CGCGuaGcCCGGGG- -5'
32225 5' -57 NC_007016.1 + 48686 0.68 0.737093
Target:  5'- aGGGCCCAcGGUUGCGaagUGGGUagcaCCu -3'
miRNA:   3'- -UCUGGGUaCUAACGCguaGCCCGg---GG- -5'
32225 5' -57 NC_007016.1 + 115714 0.69 0.697228
Target:  5'- uAGGCCCAUGGUgauauguuucUGUGacccUCGGGUgaCCCg -3'
miRNA:   3'- -UCUGGGUACUA----------ACGCgu--AGCCCG--GGG- -5'
32225 5' -57 NC_007016.1 + 115649 0.69 0.666719
Target:  5'- cGGGCaCAUGGUgGCGC--CGGcGCCCCa -3'
miRNA:   3'- -UCUGgGUACUAaCGCGuaGCC-CGGGG- -5'
32225 5' -57 NC_007016.1 + 41607 0.7 0.635956
Target:  5'- -aACCCAUGGgcGuCGCAgcaGGGCUCCc -3'
miRNA:   3'- ucUGGGUACUaaC-GCGUag-CCCGGGG- -5'
32225 5' -57 NC_007016.1 + 20877 0.7 0.615417
Target:  5'- cGGAUCCGaGGUUGcCGCGgcgCGuGCCCCg -3'
miRNA:   3'- -UCUGGGUaCUAAC-GCGUa--GCcCGGGG- -5'
32225 5' -57 NC_007016.1 + 130504 0.73 0.428245
Target:  5'- cGGCCCcgccgagGCGCccCGGGCCCCa -3'
miRNA:   3'- uCUGGGuacuaa-CGCGuaGCCCGGGG- -5'
32225 5' -57 NC_007016.1 + 130373 0.74 0.412361
Target:  5'- cGGCCCcgGg--GCGCGaccgaGGGCCCCg -3'
miRNA:   3'- uCUGGGuaCuaaCGCGUag---CCCGGGG- -5'
32225 5' -57 NC_007016.1 + 126502 0.74 0.403695
Target:  5'- cGGCCCAgcgagGGUUcGUGCGUUGGGCCa- -3'
miRNA:   3'- uCUGGGUa----CUAA-CGCGUAGCCCGGgg -5'
32225 5' -57 NC_007016.1 + 123257 1.11 0.001509
Target:  5'- aAGACCCAUGAUUGCGCAUCGGGCCCCc -3'
miRNA:   3'- -UCUGGGUACUAACGCGUAGCCCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.