miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32226 3' -57.4 NC_007016.1 + 119071 0.66 0.83334
Target:  5'- cCCGG-CGGGGUgGUCUguGUGGCu- -3'
miRNA:   3'- uGGCCgGUCCCGgUAGAguUAUCGcc -5'
32226 3' -57.4 NC_007016.1 + 116148 0.66 0.824929
Target:  5'- gGCCGGCC--GGCCAaaggugCGAUcGCGGg -3'
miRNA:   3'- -UGGCCGGucCCGGUaga---GUUAuCGCC- -5'
32226 3' -57.4 NC_007016.1 + 116289 0.66 0.816342
Target:  5'- gGCCGGCCGGccucugcccGGCCA-C-CGAggauGCGGu -3'
miRNA:   3'- -UGGCCGGUC---------CCGGUaGaGUUau--CGCC- -5'
32226 3' -57.4 NC_007016.1 + 62540 0.66 0.80847
Target:  5'- uGuuGGCCAguaaccaccgcgacGGGCCGUUgaccaccaaaagcggUCAGUGGCGc -3'
miRNA:   3'- -UggCCGGU--------------CCCGGUAG---------------AGUUAUCGCc -5'
32226 3' -57.4 NC_007016.1 + 20197 0.66 0.807587
Target:  5'- gACaCGGCgggAGGGCCAUCcucgCAAgguccGCGGg -3'
miRNA:   3'- -UG-GCCGg--UCCCGGUAGa---GUUau---CGCC- -5'
32226 3' -57.4 NC_007016.1 + 115710 0.66 0.798673
Target:  5'- gGCCGcucuuuggcGCCGGGGUCAUCcggCGGUcAGCGc -3'
miRNA:   3'- -UGGC---------CGGUCCCGGUAGa--GUUA-UCGCc -5'
32226 3' -57.4 NC_007016.1 + 27401 0.66 0.798673
Target:  5'- aGCCGugacGCCAGGGCCAaaaaaucggggCUCGuUAGCu- -3'
miRNA:   3'- -UGGC----CGGUCCCGGUa----------GAGUuAUCGcc -5'
32226 3' -57.4 NC_007016.1 + 130170 0.67 0.789608
Target:  5'- cGCgGGCCcGGGCCGg--Ccg-GGCGGa -3'
miRNA:   3'- -UGgCCGGuCCCGGUagaGuuaUCGCC- -5'
32226 3' -57.4 NC_007016.1 + 85857 0.67 0.7804
Target:  5'- --aGGCCGGGGgCGUCUCu---GgGGa -3'
miRNA:   3'- uggCCGGUCCCgGUAGAGuuauCgCC- -5'
32226 3' -57.4 NC_007016.1 + 17500 0.67 0.761594
Target:  5'- cCCGGucggucuccCCGGGGUgGUCUC---GGCGGa -3'
miRNA:   3'- uGGCC---------GGUCCCGgUAGAGuuaUCGCC- -5'
32226 3' -57.4 NC_007016.1 + 130062 0.67 0.761594
Target:  5'- cGCCGcgcGCC-GGGCCGcUUUCGGUucGCGGg -3'
miRNA:   3'- -UGGC---CGGuCCCGGU-AGAGUUAu-CGCC- -5'
32226 3' -57.4 NC_007016.1 + 6123 0.67 0.761594
Target:  5'- gUCGGCCGaacaGGCCGU-UCAcGUGGCGGg -3'
miRNA:   3'- uGGCCGGUc---CCGGUAgAGU-UAUCGCC- -5'
32226 3' -57.4 NC_007016.1 + 96483 0.68 0.732545
Target:  5'- gACCaGGCgAcGGGCCAgUUCGucGGCGGg -3'
miRNA:   3'- -UGG-CCGgU-CCCGGUaGAGUuaUCGCC- -5'
32226 3' -57.4 NC_007016.1 + 11129 0.68 0.722675
Target:  5'- uACCGGUCAcGGCgGUCUCGguccacccucgAUAGaCGGu -3'
miRNA:   3'- -UGGCCGGUcCCGgUAGAGU-----------UAUC-GCC- -5'
32226 3' -57.4 NC_007016.1 + 130309 0.68 0.712727
Target:  5'- gGCCGGaCCGGGGCg--CUCccgggAGUcGGCGGg -3'
miRNA:   3'- -UGGCC-GGUCCCGguaGAG-----UUA-UCGCC- -5'
32226 3' -57.4 NC_007016.1 + 10351 0.68 0.692633
Target:  5'- uCCGGCCGccucgaaacacuGGGCCAgcaCGAcguUGGCGGg -3'
miRNA:   3'- uGGCCGGU------------CCCGGUagaGUU---AUCGCC- -5'
32226 3' -57.4 NC_007016.1 + 48349 0.69 0.65191
Target:  5'- uCUGGCCAGagacGGaaCUAUCUCGAgGGCGGg -3'
miRNA:   3'- uGGCCGGUC----CC--GGUAGAGUUaUCGCC- -5'
32226 3' -57.4 NC_007016.1 + 73818 0.69 0.641668
Target:  5'- cUCGGUCuGGGCCAgaUCAAU-GCGGu -3'
miRNA:   3'- uGGCCGGuCCCGGUagAGUUAuCGCC- -5'
32226 3' -57.4 NC_007016.1 + 78464 0.69 0.641668
Target:  5'- -gUGGCCGGGGCgGUC---AUGGUGGa -3'
miRNA:   3'- ugGCCGGUCCCGgUAGaguUAUCGCC- -5'
32226 3' -57.4 NC_007016.1 + 18465 0.7 0.62117
Target:  5'- uGCCGuuaCGGGGCCGUCggugCGAUuguuuccggggGGCGGg -3'
miRNA:   3'- -UGGCcg-GUCCCGGUAGa---GUUA-----------UCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.