miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32226 5' -61.7 NC_007016.1 + 16886 0.66 0.655208
Target:  5'- gCGCCGCCGuucUCGCcgaaGACGUaCGUaaccgcgcgcuccaGGUCGa -3'
miRNA:   3'- -GCGGCGGC---AGCGa---CUGCA-GCA--------------CCGGC- -5'
32226 5' -61.7 NC_007016.1 + 18690 0.66 0.648347
Target:  5'- -cCCGCCGUCGUgGGCGUgGUuGCUa -3'
miRNA:   3'- gcGGCGGCAGCGaCUGCAgCAcCGGc -5'
32226 5' -61.7 NC_007016.1 + 116591 0.66 0.628721
Target:  5'- aGCCG-CGcCGCuUGGCGgCGcGGCCGg -3'
miRNA:   3'- gCGGCgGCaGCG-ACUGCaGCaCCGGC- -5'
32226 5' -61.7 NC_007016.1 + 90526 0.67 0.618909
Target:  5'- uGCCGCUGacagauagccUUGCUGACGUCaaguUGGgCGu -3'
miRNA:   3'- gCGGCGGC----------AGCGACUGCAGc---ACCgGC- -5'
32226 5' -61.7 NC_007016.1 + 78442 0.67 0.570113
Target:  5'- gGCgGUgGUUGCgGACGccUCgGUGGCCGg -3'
miRNA:   3'- gCGgCGgCAGCGaCUGC--AG-CACCGGC- -5'
32226 5' -61.7 NC_007016.1 + 14282 0.68 0.550834
Target:  5'- gCGUCGCCGUCGCg-----CGUGGCg- -3'
miRNA:   3'- -GCGGCGGCAGCGacugcaGCACCGgc -5'
32226 5' -61.7 NC_007016.1 + 123543 0.68 0.53176
Target:  5'- gGCCGCauucacuaaCGUCGgguucGACGUCGcGGCCGu -3'
miRNA:   3'- gCGGCG---------GCAGCga---CUGCAGCaCCGGC- -5'
32226 5' -61.7 NC_007016.1 + 89340 0.68 0.522312
Target:  5'- aGCgGCCGUgcUGCUGACGcucacgcacguuUUGgGGCCGg -3'
miRNA:   3'- gCGgCGGCA--GCGACUGC------------AGCaCCGGC- -5'
32226 5' -61.7 NC_007016.1 + 126948 0.69 0.503617
Target:  5'- gGCCGCCccucCGCUGGCG-CGUuGCCu -3'
miRNA:   3'- gCGGCGGca--GCGACUGCaGCAcCGGc -5'
32226 5' -61.7 NC_007016.1 + 22710 0.7 0.415141
Target:  5'- gGCgGCCGgUGgUGGCGUCGgcaaaaauagUGGCCGg -3'
miRNA:   3'- gCGgCGGCaGCgACUGCAGC----------ACCGGC- -5'
32226 5' -61.7 NC_007016.1 + 115324 0.71 0.374619
Target:  5'- uCGCCGCCG-CGCgucgguuugauUGACGgcUCGgcgGGCCa -3'
miRNA:   3'- -GCGGCGGCaGCG-----------ACUGC--AGCa--CCGGc -5'
32226 5' -61.7 NC_007016.1 + 9928 0.72 0.322555
Target:  5'- uGCCGCgGUCGCcgcgacggUGGCGgucCGUGGCUc -3'
miRNA:   3'- gCGGCGgCAGCG--------ACUGCa--GCACCGGc -5'
32226 5' -61.7 NC_007016.1 + 26770 0.73 0.295317
Target:  5'- aCGCCGCCGUUGCcGGCaUCGagggUGGCgCGg -3'
miRNA:   3'- -GCGGCGGCAGCGaCUGcAGC----ACCG-GC- -5'
32226 5' -61.7 NC_007016.1 + 123914 1.09 0.000864
Target:  5'- aCGCCGCCGUCGCUGACGUCGUGGCCGg -3'
miRNA:   3'- -GCGGCGGCAGCGACUGCAGCACCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.