miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32227 5' -50.1 NC_007016.1 + 13385 0.66 0.995834
Target:  5'- aGGGGGGGCGugguccuCGAGGACC-CAGguacGGGUu -3'
miRNA:   3'- -CCCUCUUGCc------GUUUCUGGuGUU----UCCG- -5'
32227 5' -50.1 NC_007016.1 + 122213 0.66 0.995834
Target:  5'- uGGucucuGggUGGCGcAGGGCCguucuAUAGAGGCu -3'
miRNA:   3'- cCCu----CuuGCCGU-UUCUGG-----UGUUUCCG- -5'
32227 5' -50.1 NC_007016.1 + 20838 0.66 0.995834
Target:  5'- cGGcGAGcACGGCGA--GCUGCAGuaccuGGCg -3'
miRNA:   3'- -CC-CUCuUGCCGUUucUGGUGUUu----CCG- -5'
32227 5' -50.1 NC_007016.1 + 71170 0.66 0.995834
Target:  5'- uGGAcgugucGAUGGacGAGACCAcCAGAGGCg -3'
miRNA:   3'- cCCUc-----UUGCCguUUCUGGU-GUUUCCG- -5'
32227 5' -50.1 NC_007016.1 + 20577 0.66 0.995834
Target:  5'- cGGGucccgcgccuucuuGGCGGCGcAGggcuuuggggaccGCCGCGAGGGCg -3'
miRNA:   3'- -CCCuc------------UUGCCGUuUC-------------UGGUGUUUCCG- -5'
32227 5' -50.1 NC_007016.1 + 20085 0.66 0.995834
Target:  5'- aGGAGGGCguagcuGGCAAuguuaaacgGGACC-CcGAGGCc -3'
miRNA:   3'- cCCUCUUG------CCGUU---------UCUGGuGuUUCCG- -5'
32227 5' -50.1 NC_007016.1 + 119050 0.66 0.995124
Target:  5'- cGGGGGuccUGGCcGAGACgGCcc-GGCg -3'
miRNA:   3'- -CCCUCuu-GCCGuUUCUGgUGuuuCCG- -5'
32227 5' -50.1 NC_007016.1 + 131017 0.66 0.995124
Target:  5'- -cGAGGGCGuuGCAGGGuCCACAcGAGGa -3'
miRNA:   3'- ccCUCUUGC--CGUUUCuGGUGU-UUCCg -5'
32227 5' -50.1 NC_007016.1 + 121434 0.66 0.995124
Target:  5'- cGGGcGAuguugccgugGCGGCGu---CUGCAAAGGCu -3'
miRNA:   3'- -CCCuCU----------UGCCGUuucuGGUGUUUCCG- -5'
32227 5' -50.1 NC_007016.1 + 67291 0.66 0.995124
Target:  5'- cGGAGAugaaGGCcAAGugUuUAGGGGCg -3'
miRNA:   3'- cCCUCUug--CCGuUUCugGuGUUUCCG- -5'
32227 5' -50.1 NC_007016.1 + 63511 0.66 0.995124
Target:  5'- aGGcGAGucCGGUGGcuuGACCGCGAuGGUa -3'
miRNA:   3'- -CC-CUCuuGCCGUUu--CUGGUGUUuCCG- -5'
32227 5' -50.1 NC_007016.1 + 40460 0.66 0.994319
Target:  5'- uGGAGAACGGgAcgcuCCGCGagaugcucGAGGCc -3'
miRNA:   3'- cCCUCUUGCCgUuucuGGUGU--------UUCCG- -5'
32227 5' -50.1 NC_007016.1 + 126074 0.66 0.994319
Target:  5'- --cAGGGCGGCAAAuGugCcCGGGGGUa -3'
miRNA:   3'- cccUCUUGCCGUUU-CugGuGUUUCCG- -5'
32227 5' -50.1 NC_007016.1 + 50144 0.66 0.994319
Target:  5'- ---uGAGCGGUAAAGGguCCAC--GGGCu -3'
miRNA:   3'- cccuCUUGCCGUUUCU--GGUGuuUCCG- -5'
32227 5' -50.1 NC_007016.1 + 92651 0.66 0.994319
Target:  5'- aGGAGGA--GC--AGGCCACGcGGGCg -3'
miRNA:   3'- cCCUCUUgcCGuuUCUGGUGUuUCCG- -5'
32227 5' -50.1 NC_007016.1 + 102908 0.66 0.994319
Target:  5'- aGGGuaaAGGGCGG-AAAGACCACcguAGAcGCg -3'
miRNA:   3'- -CCC---UCUUGCCgUUUCUGGUG---UUUcCG- -5'
32227 5' -50.1 NC_007016.1 + 123871 0.66 0.994319
Target:  5'- aGGccacAGuguGCGGCAccguGGGCCAgGAGGGUc -3'
miRNA:   3'- cCC----UCu--UGCCGUu---UCUGGUgUUUCCG- -5'
32227 5' -50.1 NC_007016.1 + 6650 0.66 0.993787
Target:  5'- uGGAGAuccugGGCAacuucgcgaguuucaGAGACCGCGAGGa- -3'
miRNA:   3'- cCCUCUug---CCGU---------------UUCUGGUGUUUCcg -5'
32227 5' -50.1 NC_007016.1 + 93337 0.66 0.99341
Target:  5'- uGGGcGGGACGGCGccuaccGAGAgCGuu-AGGCg -3'
miRNA:   3'- -CCC-UCUUGCCGU------UUCUgGUguuUCCG- -5'
32227 5' -50.1 NC_007016.1 + 115890 0.66 0.99341
Target:  5'- cGGGuGAccCGGCGAuGGcACCGC--GGGCg -3'
miRNA:   3'- -CCCuCUu-GCCGUU-UC-UGGUGuuUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.