Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32228 | 5' | -58.8 | NC_007016.1 | + | 107456 | 0.66 | 0.69439 |
Target: 5'- gUGGCCUgggcccuucggacGCgggacUGCUGGCCUcGCU-GCg- -3' miRNA: 3'- -ACCGGA-------------CGa----ACGACCGGA-CGAaCGac -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 87546 | 0.66 | 0.674767 |
Target: 5'- cUGGCCUGag----GGCCUGgUUGCUu -3' miRNA: 3'- -ACCGGACgaacgaCCGGACgAACGAc -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 39631 | 0.67 | 0.655012 |
Target: 5'- aGGCCUGCaguuugacagagcgGC-GGCCgugGCUcacgUGCUGg -3' miRNA: 3'- aCCGGACGaa------------CGaCCGGa--CGA----ACGAC- -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 529 | 0.69 | 0.497125 |
Target: 5'- -uGCCUGCUUGCUugcugcugaGgggacaguagggcuGCCUGCUUGCUu -3' miRNA: 3'- acCGGACGAACGA---------C--------------CGGACGAACGAc -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 130915 | 0.69 | 0.497125 |
Target: 5'- -uGCCUGCUUGCUugcugcugaGgggacaguagggcuGCCUGCUUGCUu -3' miRNA: 3'- acCGGACGAACGA---------C--------------CGGACGAACGAc -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 99 | 0.74 | 0.268875 |
Target: 5'- aUGGCCUGCUggccUGCUcGCUUGCUUGgUa -3' miRNA: 3'- -ACCGGACGA----ACGAcCGGACGAACgAc -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 130475 | 0.74 | 0.268875 |
Target: 5'- aUGGCCUGCUggccUGCUcGCUUGCUUGgUa -3' miRNA: 3'- -ACCGGACGA----ACGAcCGGACGAACgAc -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 130844 | 0.76 | 0.188359 |
Target: 5'- nGGCCUGCUUGCUugcugcugaGgggacaguagggcuGCCUGCUUGCUu -3' miRNA: 3'- aCCGGACGAACGA---------C--------------CGGACGAACGAc -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 458 | 0.76 | 0.188359 |
Target: 5'- nGGCCUGCUUGCUugcugcugaGgggacaguagggcuGCCUGCUUGCUu -3' miRNA: 3'- aCCGGACGAACGA---------C--------------CGGACGAACGAc -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 130725 | 0.81 | 0.093183 |
Target: 5'- nGGCCUGCUUGCU-GCCUGCUUGn-- -3' miRNA: 3'- aCCGGACGAACGAcCGGACGAACgac -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 397 | 1.09 | 0.000957 |
Target: 5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3' miRNA: 3'- -ACCGGACGAACGACCGGACGAACGAC- -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 253 | 1.09 | 0.000957 |
Target: 5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3' miRNA: 3'- -ACCGGACGAACGACCGGACGAACGAC- -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 325 | 1.09 | 0.000957 |
Target: 5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3' miRNA: 3'- -ACCGGACGAACGACCGGACGAACGAC- -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 130783 | 1.09 | 0.000957 |
Target: 5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3' miRNA: 3'- -ACCGGACGAACGACCGGACGAACGAC- -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 130747 | 1.09 | 0.000957 |
Target: 5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3' miRNA: 3'- -ACCGGACGAACGACCGGACGAACGAC- -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 130700 | 1.09 | 0.000957 |
Target: 5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3' miRNA: 3'- -ACCGGACGAACGACCGGACGAACGAC- -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 130664 | 1.09 | 0.000957 |
Target: 5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3' miRNA: 3'- -ACCGGACGAACGACCGGACGAACGAC- -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 361 | 1.09 | 0.000957 |
Target: 5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3' miRNA: 3'- -ACCGGACGAACGACCGGACGAACGAC- -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 130592 | 1.09 | 0.000957 |
Target: 5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3' miRNA: 3'- -ACCGGACGAACGACCGGACGAACGAC- -5' |
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32228 | 5' | -58.8 | NC_007016.1 | + | 130556 | 1.09 | 0.000957 |
Target: 5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3' miRNA: 3'- -ACCGGACGAACGACCGGACGAACGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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