Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32230 | 3' | -57.6 | NC_007016.1 | + | 849 | 0.66 | 0.759195 |
Target: 5'- aCCUGCcggGCagaucugGGCC-GCUUGCccGGCg -3' miRNA: 3'- cGGACGaa-CGa------CCGGaCGAACGa-CCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 130368 | 0.66 | 0.749421 |
Target: 5'- cGCCgcgGCUUGUggGGCCccggGCUcgGggGGCg -3' miRNA: 3'- -CGGa--CGAACGa-CCGGa---CGAa-CgaCCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 28114 | 0.67 | 0.739541 |
Target: 5'- cGCCUGCUaG-UGGCgCUgaGCUacUGCUuGGCg -3' miRNA: 3'- -CGGACGAaCgACCG-GA--CGA--ACGA-CCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 107454 | 0.67 | 0.708336 |
Target: 5'- gGCCUgggcccuucggacGCgggacUGCUGGCCUcGCUgcgagaaCUGGCg -3' miRNA: 3'- -CGGA-------------CGa----ACGACCGGA-CGAac-----GACCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 105485 | 0.67 | 0.699144 |
Target: 5'- uGCCU-CUgGUUGGCgagagGCUaUGCUGGCg -3' miRNA: 3'- -CGGAcGAaCGACCGga---CGA-ACGACCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 86812 | 0.68 | 0.678556 |
Target: 5'- uGCCUGCacaaacguuccUUGCaaGGgUUGCUUgggaGCUGGCa -3' miRNA: 3'- -CGGACG-----------AACGa-CCgGACGAA----CGACCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 21548 | 0.68 | 0.647401 |
Target: 5'- aGCCUGCUugacgaUGCUuccgacgaaGGCCUGgaguCUGGCa -3' miRNA: 3'- -CGGACGA------ACGA---------CCGGACgaacGACCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 119098 | 0.7 | 0.558219 |
Target: 5'- cGCCUG-UUGCguguuaggggauggGGCCUGUUgaggcGUUGGCg -3' miRNA: 3'- -CGGACgAACGa-------------CCGGACGAa----CGACCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 84 | 0.74 | 0.34668 |
Target: 5'- uGCUUGUggaacacuauggccUGCUGGCCUGCUcgcuUGCUuGGUa -3' miRNA: 3'- -CGGACGa-------------ACGACCGGACGA----ACGA-CCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 130460 | 0.74 | 0.34668 |
Target: 5'- uGCUUGUggaacacuauggccUGCUGGCCUGCUcgcuUGCUuGGUa -3' miRNA: 3'- -CGGACGa-------------ACGACCGGACGA----ACGA-CCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 130950 | 0.75 | 0.305998 |
Target: 5'- uGCCUGCUUGCUugcugcugaguaGGaCUGCUaggGCUGGa -3' miRNA: 3'- -CGGACGAACGA------------CCgGACGAa--CGACCg -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 130880 | 0.75 | 0.303848 |
Target: 5'- uGCCUGCUUGCUugcugcugaGgggacaguagggcuGCCUGCUUGCUuGCu -3' miRNA: 3'- -CGGACGAACGA---------C--------------CGGACGAACGAcCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 494 | 0.75 | 0.303848 |
Target: 5'- uGCCUGCUUGCUugcugcugaGgggacaguagggcuGCCUGCUUGCUuGCu -3' miRNA: 3'- -CGGACGAACGA---------C--------------CGGACGAACGAcCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 564 | 0.78 | 0.191996 |
Target: 5'- uGCCUGCUUGCUugcugcugaguaGGaCUGCUaggGCUGGUa -3' miRNA: 3'- -CGGACGAACGA------------CCgGACGAa--CGACCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 231 | 0.84 | 0.073973 |
Target: 5'- nCCUGCUUGCUGGCCUGCUuUGCUn-- -3' miRNA: 3'- cGGACGAACGACCGGACGA-ACGAccg -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 130715 | 0.87 | 0.04766 |
Target: 5'- nCCUGCUUGCUGGCCUGCUUGCn--- -3' miRNA: 3'- cGGACGAACGACCGGACGAACGaccg -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 130834 | 0.96 | 0.010514 |
Target: 5'- nCCUGCUUGCUGGCCUGCUUGCUuGCu -3' miRNA: 3'- cGGACGAACGACCGGACGAACGAcCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 130737 | 1.12 | 0.000801 |
Target: 5'- uGCCUGCUUGCUGGCCUGCUUGCUGGCc -3' miRNA: 3'- -CGGACGAACGACCGGACGAACGACCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 130773 | 1.12 | 0.000801 |
Target: 5'- gGCCUGCUUGCUGGCCUGCUUGCUGGCc -3' miRNA: 3'- -CGGACGAACGACCGGACGAACGACCG- -5' |
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32230 | 3' | -57.6 | NC_007016.1 | + | 399 | 1.12 | 0.000801 |
Target: 5'- gGCCUGCUUGCUGGCCUGCUUGCUGGCc -3' miRNA: 3'- -CGGACGAACGACCGGACGAACGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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