miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32230 5' -58.8 NC_007016.1 + 107456 0.66 0.69439
Target:  5'- gUGGCCUgggcccuucggacGCgggacUGCUGGCCUcGCU-GCg- -3'
miRNA:   3'- -ACCGGA-------------CGa----ACGACCGGA-CGAaCGac -5'
32230 5' -58.8 NC_007016.1 + 87546 0.66 0.674767
Target:  5'- cUGGCCUGag----GGCCUGgUUGCUu -3'
miRNA:   3'- -ACCGGACgaacgaCCGGACgAACGAc -5'
32230 5' -58.8 NC_007016.1 + 39631 0.67 0.655012
Target:  5'- aGGCCUGCaguuugacagagcgGC-GGCCgugGCUcacgUGCUGg -3'
miRNA:   3'- aCCGGACGaa------------CGaCCGGa--CGA----ACGAC- -5'
32230 5' -58.8 NC_007016.1 + 529 0.69 0.497125
Target:  5'- -uGCCUGCUUGCUugcugcugaGgggacaguagggcuGCCUGCUUGCUu -3'
miRNA:   3'- acCGGACGAACGA---------C--------------CGGACGAACGAc -5'
32230 5' -58.8 NC_007016.1 + 130915 0.69 0.497125
Target:  5'- -uGCCUGCUUGCUugcugcugaGgggacaguagggcuGCCUGCUUGCUu -3'
miRNA:   3'- acCGGACGAACGA---------C--------------CGGACGAACGAc -5'
32230 5' -58.8 NC_007016.1 + 99 0.74 0.268875
Target:  5'- aUGGCCUGCUggccUGCUcGCUUGCUUGgUa -3'
miRNA:   3'- -ACCGGACGA----ACGAcCGGACGAACgAc -5'
32230 5' -58.8 NC_007016.1 + 130475 0.74 0.268875
Target:  5'- aUGGCCUGCUggccUGCUcGCUUGCUUGgUa -3'
miRNA:   3'- -ACCGGACGA----ACGAcCGGACGAACgAc -5'
32230 5' -58.8 NC_007016.1 + 130844 0.76 0.188359
Target:  5'- nGGCCUGCUUGCUugcugcugaGgggacaguagggcuGCCUGCUUGCUu -3'
miRNA:   3'- aCCGGACGAACGA---------C--------------CGGACGAACGAc -5'
32230 5' -58.8 NC_007016.1 + 458 0.76 0.188359
Target:  5'- nGGCCUGCUUGCUugcugcugaGgggacaguagggcuGCCUGCUUGCUu -3'
miRNA:   3'- aCCGGACGAACGA---------C--------------CGGACGAACGAc -5'
32230 5' -58.8 NC_007016.1 + 130725 0.81 0.093183
Target:  5'- nGGCCUGCUUGCU-GCCUGCUUGn-- -3'
miRNA:   3'- aCCGGACGAACGAcCGGACGAACgac -5'
32230 5' -58.8 NC_007016.1 + 397 1.09 0.000957
Target:  5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3'
miRNA:   3'- -ACCGGACGAACGACCGGACGAACGAC- -5'
32230 5' -58.8 NC_007016.1 + 253 1.09 0.000957
Target:  5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3'
miRNA:   3'- -ACCGGACGAACGACCGGACGAACGAC- -5'
32230 5' -58.8 NC_007016.1 + 325 1.09 0.000957
Target:  5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3'
miRNA:   3'- -ACCGGACGAACGACCGGACGAACGAC- -5'
32230 5' -58.8 NC_007016.1 + 130783 1.09 0.000957
Target:  5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3'
miRNA:   3'- -ACCGGACGAACGACCGGACGAACGAC- -5'
32230 5' -58.8 NC_007016.1 + 130747 1.09 0.000957
Target:  5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3'
miRNA:   3'- -ACCGGACGAACGACCGGACGAACGAC- -5'
32230 5' -58.8 NC_007016.1 + 130700 1.09 0.000957
Target:  5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3'
miRNA:   3'- -ACCGGACGAACGACCGGACGAACGAC- -5'
32230 5' -58.8 NC_007016.1 + 130664 1.09 0.000957
Target:  5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3'
miRNA:   3'- -ACCGGACGAACGACCGGACGAACGAC- -5'
32230 5' -58.8 NC_007016.1 + 361 1.09 0.000957
Target:  5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3'
miRNA:   3'- -ACCGGACGAACGACCGGACGAACGAC- -5'
32230 5' -58.8 NC_007016.1 + 130592 1.09 0.000957
Target:  5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3'
miRNA:   3'- -ACCGGACGAACGACCGGACGAACGAC- -5'
32230 5' -58.8 NC_007016.1 + 130556 1.09 0.000957
Target:  5'- cUGGCCUGCUUGCUGGCCUGCUUGCUGg -3'
miRNA:   3'- -ACCGGACGAACGACCGGACGAACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.