miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32245 5' -44.7 NC_007022.1 + 70442 0.66 0.999999
Target:  5'- uGGAAUGGUauaCACUGGagacuUAAAAucUCCCg -3'
miRNA:   3'- uUUUUACCAgc-GUGACC-----AUUUU--AGGG- -5'
32245 5' -44.7 NC_007022.1 + 147383 0.66 0.999998
Target:  5'- ----uUGaGUUGCgACUcGUAAGGUCCCa -3'
miRNA:   3'- uuuuuAC-CAGCG-UGAcCAUUUUAGGG- -5'
32245 5' -44.7 NC_007022.1 + 68758 0.66 0.999998
Target:  5'- -----cGGUaGCucaGCUGGUAGAGcCCCa -3'
miRNA:   3'- uuuuuaCCAgCG---UGACCAUUUUaGGG- -5'
32245 5' -44.7 NC_007022.1 + 17280 0.68 0.999981
Target:  5'- gAAGAAUGGUCGC--UGGUGAuucaggcGGUaaCCCu -3'
miRNA:   3'- -UUUUUACCAGCGugACCAUU-------UUA--GGG- -5'
32245 5' -44.7 NC_007022.1 + 146958 0.68 0.999952
Target:  5'- -uGAAUGaUCGUACUGcUAcuGAGUCCCg -3'
miRNA:   3'- uuUUUACcAGCGUGACcAU--UUUAGGG- -5'
32245 5' -44.7 NC_007022.1 + 139180 0.68 0.999952
Target:  5'- --uAAUGGUUGuCAUUGGUGAuAUCaaCCg -3'
miRNA:   3'- uuuUUACCAGC-GUGACCAUUuUAG--GG- -5'
32245 5' -44.7 NC_007022.1 + 171877 0.69 0.999851
Target:  5'- cAAAAUGcGUUGUGCUGGUuauGAAGUUCUu -3'
miRNA:   3'- uUUUUAC-CAGCGUGACCA---UUUUAGGG- -5'
32245 5' -44.7 NC_007022.1 + 10769 0.69 0.999834
Target:  5'- cGAGAUGG-CGUGCUGGUGGAGauaagagaaugacCCCu -3'
miRNA:   3'- uUUUUACCaGCGUGACCAUUUUa------------GGG- -5'
32245 5' -44.7 NC_007022.1 + 119748 0.69 0.999806
Target:  5'- cGAAGAUGGcCGC-CUGGUucuuUCUCu -3'
miRNA:   3'- -UUUUUACCaGCGuGACCAuuuuAGGG- -5'
32245 5' -44.7 NC_007022.1 + 91745 0.71 0.998788
Target:  5'- -----cGGUCGCAgUUGGcaaccGGAAUCCCg -3'
miRNA:   3'- uuuuuaCCAGCGU-GACCa----UUUUAGGG- -5'
32245 5' -44.7 NC_007022.1 + 145240 0.71 0.99852
Target:  5'- -uAAcgGGUCGUACUGGUAAAu---- -3'
miRNA:   3'- uuUUuaCCAGCGUGACCAUUUuaggg -5'
32245 5' -44.7 NC_007022.1 + 15915 1.13 0.023474
Target:  5'- gAAAAAUGGUCGCACUGGUAAAAUCCCg -3'
miRNA:   3'- -UUUUUACCAGCGUGACCAUUUUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.