miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32246 3' -47.8 NC_007022.1 + 128978 0.66 0.999676
Target:  5'- cGUcGGCCuucaguuGaGCGAAAGCCGgGAAAa -3'
miRNA:   3'- aCAaUUGGu------C-CGCUUUCGGCgUUUUc -5'
32246 3' -47.8 NC_007022.1 + 104147 0.66 0.999627
Target:  5'- aGUgGACCccgcugcuggaAGGCGAAGGCCugccggaaauugcugGCAAAAa -3'
miRNA:   3'- aCAaUUGG-----------UCCGCUUUCGG---------------CGUUUUc -5'
32246 3' -47.8 NC_007022.1 + 168265 0.66 0.999591
Target:  5'- ---gAGCCAGGUGA-AGCgGCAu--- -3'
miRNA:   3'- acaaUUGGUCCGCUuUCGgCGUuuuc -5'
32246 3' -47.8 NC_007022.1 + 125494 0.66 0.999475
Target:  5'- ---aAGCCAGGCGAgcgugaaGAGCgGUggauAAAAGg -3'
miRNA:   3'- acaaUUGGUCCGCU-------UUCGgCG----UUUUC- -5'
32246 3' -47.8 NC_007022.1 + 127759 0.67 0.99936
Target:  5'- -uUUAACCagauGGGCGAuAGCCGUc---- -3'
miRNA:   3'- acAAUUGG----UCCGCUuUCGGCGuuuuc -5'
32246 3' -47.8 NC_007022.1 + 99541 0.67 0.999024
Target:  5'- --cUGGCCAcGGCGguAGCCGgCuGGAGa -3'
miRNA:   3'- acaAUUGGU-CCGCuuUCGGC-GuUUUC- -5'
32246 3' -47.8 NC_007022.1 + 39371 0.68 0.997473
Target:  5'- ---gAAUCGGGUGAAuugaauGGCCGCAAc-- -3'
miRNA:   3'- acaaUUGGUCCGCUU------UCGGCGUUuuc -5'
32246 3' -47.8 NC_007022.1 + 99477 0.69 0.993329
Target:  5'- ---aAACCu-GCGAuaucAGCCGCAAGAGg -3'
miRNA:   3'- acaaUUGGucCGCUu---UCGGCGUUUUC- -5'
32246 3' -47.8 NC_007022.1 + 26750 0.7 0.992282
Target:  5'- --aUGGCCAGaGCGAAagcAGCUGCccaGAAAGa -3'
miRNA:   3'- acaAUUGGUC-CGCUU---UCGGCG---UUUUC- -5'
32246 3' -47.8 NC_007022.1 + 47072 0.7 0.986733
Target:  5'- gUGUUcaAACCguaaAGGUGAGAGCCGUgcAGGc -3'
miRNA:   3'- -ACAA--UUGG----UCCGCUUUCGGCGuuUUC- -5'
32246 3' -47.8 NC_007022.1 + 36509 0.7 0.986563
Target:  5'- -aUUAGCCAGGCGAAaagcaguGGCCGa----- -3'
miRNA:   3'- acAAUUGGUCCGCUU-------UCGGCguuuuc -5'
32246 3' -47.8 NC_007022.1 + 133635 0.71 0.980863
Target:  5'- cUGUgaUGACCAuGCGAAAGCUGCcGGAu -3'
miRNA:   3'- -ACA--AUUGGUcCGCUUUCGGCGuUUUc -5'
32246 3' -47.8 NC_007022.1 + 52891 0.72 0.967067
Target:  5'- ---cGAUUAGGCGAuAGUCGCGAAAu -3'
miRNA:   3'- acaaUUGGUCCGCUuUCGGCGUUUUc -5'
32246 3' -47.8 NC_007022.1 + 157647 0.73 0.959949
Target:  5'- --aUGGCCAGGCGGAuGGCUGCu---- -3'
miRNA:   3'- acaAUUGGUCCGCUU-UCGGCGuuuuc -5'
32246 3' -47.8 NC_007022.1 + 26470 1.1 0.017162
Target:  5'- aUGUUAACCAGGCGAAAGCCGCAAAAGc -3'
miRNA:   3'- -ACAAUUGGUCCGCUUUCGGCGUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.