miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32247 3' -54.3 NC_007022.1 + 124368 0.66 0.962208
Target:  5'- gGCGGCgGUCGuuuCAuUGUAUugCCGGaGUu -3'
miRNA:   3'- aCGCCG-CAGUu--GU-ACAUGugGGUC-CG- -5'
32247 3' -54.3 NC_007022.1 + 98609 0.66 0.950807
Target:  5'- aGCGGCGcUCAGCAgacgauuUACCCGuucGGUg -3'
miRNA:   3'- aCGCCGC-AGUUGUacau---GUGGGU---CCG- -5'
32247 3' -54.3 NC_007022.1 + 90333 0.66 0.949131
Target:  5'- aGUGGCGUCAugGUugucgcaucaucaGUcccagagguugcuuGCGCCUGGGUc -3'
miRNA:   3'- aCGCCGCAGUugUA-------------CA--------------UGUGGGUCCG- -5'
32247 3' -54.3 NC_007022.1 + 96956 0.67 0.927117
Target:  5'- -cCGGCGUCcuGACGagauuacugguUGUAucgcCAUCCAGGCa -3'
miRNA:   3'- acGCCGCAG--UUGU-----------ACAU----GUGGGUCCG- -5'
32247 3' -54.3 NC_007022.1 + 61102 0.68 0.910015
Target:  5'- gGCGGCGUuucaCAAgGUGUugAaCCCuuGGUg -3'
miRNA:   3'- aCGCCGCA----GUUgUACAugU-GGGu-CCG- -5'
32247 3' -54.3 NC_007022.1 + 16272 0.68 0.909408
Target:  5'- aGCGG-GUCGugAUGUGggacaagUGCCCAuGGCc -3'
miRNA:   3'- aCGCCgCAGUugUACAU-------GUGGGU-CCG- -5'
32247 3' -54.3 NC_007022.1 + 50343 0.68 0.906335
Target:  5'- gGCGGUGUUaAGCAUuUACAacgcgccagcuaguuCCUAGGCg -3'
miRNA:   3'- aCGCCGCAG-UUGUAcAUGU---------------GGGUCCG- -5'
32247 3' -54.3 NC_007022.1 + 90088 0.71 0.794629
Target:  5'- cGCGGCa-CAAUgcGUAUuucgACCCAGGCg -3'
miRNA:   3'- aCGCCGcaGUUGuaCAUG----UGGGUCCG- -5'
32247 3' -54.3 NC_007022.1 + 32246 0.71 0.785464
Target:  5'- aGCGG-GUCGc---GUAgGCCCAGGCg -3'
miRNA:   3'- aCGCCgCAGUuguaCAUgUGGGUCCG- -5'
32247 3' -54.3 NC_007022.1 + 149460 0.73 0.657005
Target:  5'- gGCGGCGgugcuaCAuUAUGggGCugCCAGGCa -3'
miRNA:   3'- aCGCCGCa-----GUuGUACa-UGugGGUCCG- -5'
32247 3' -54.3 NC_007022.1 + 58118 1.13 0.002687
Target:  5'- cUGCGGCGUCAACAUGUACACCCAGGCa -3'
miRNA:   3'- -ACGCCGCAGUUGUACAUGUGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.