miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32250 5' -44.3 NC_007022.1 + 162203 0.66 0.999999
Target:  5'- uGAUugGGUUGcuAUugaccAACGCCUGCAAa-- -3'
miRNA:   3'- -CUGugCCGAU--UA-----UUGUGGAUGUUaaa -5'
32250 5' -44.3 NC_007022.1 + 74372 0.66 0.999999
Target:  5'- cGGCACcuucagcaGGCUGA--ACACCaACGAUUUg -3'
miRNA:   3'- -CUGUG--------CCGAUUauUGUGGaUGUUAAA- -5'
32250 5' -44.3 NC_007022.1 + 37196 0.66 0.999999
Target:  5'- uACAUGGCUGAcGGCGCCga-AGUa- -3'
miRNA:   3'- cUGUGCCGAUUaUUGUGGaugUUAaa -5'
32250 5' -44.3 NC_007022.1 + 15263 0.66 0.999999
Target:  5'- aACAauUGGCU---GACGCCUACAAa-- -3'
miRNA:   3'- cUGU--GCCGAuuaUUGUGGAUGUUaaa -5'
32250 5' -44.3 NC_007022.1 + 132424 0.66 0.999998
Target:  5'- -uCGCGGCUGGUuGCugCaUGCAAa-- -3'
miRNA:   3'- cuGUGCCGAUUAuUGugG-AUGUUaaa -5'
32250 5' -44.3 NC_007022.1 + 168381 0.66 0.999998
Target:  5'- -cCACGGUUGGUcucuugguCACCUACGAa-- -3'
miRNA:   3'- cuGUGCCGAUUAuu------GUGGAUGUUaaa -5'
32250 5' -44.3 NC_007022.1 + 105172 0.67 0.999997
Target:  5'- -gUugGGCUGGUGAauCCUACAAa-- -3'
miRNA:   3'- cuGugCCGAUUAUUguGGAUGUUaaa -5'
32250 5' -44.3 NC_007022.1 + 723 0.67 0.999995
Target:  5'- cAUACGGU----GACACCUACGAc-- -3'
miRNA:   3'- cUGUGCCGauuaUUGUGGAUGUUaaa -5'
32250 5' -44.3 NC_007022.1 + 47274 0.67 0.999986
Target:  5'- uGCACGGCUcu---CACCUuuACGGUUUg -3'
miRNA:   3'- cUGUGCCGAuuauuGUGGA--UGUUAAA- -5'
32250 5' -44.3 NC_007022.1 + 156606 0.68 0.999972
Target:  5'- uGACgACGGCgauuuguAUACCUACGAUa- -3'
miRNA:   3'- -CUG-UGCCGauuau--UGUGGAUGUUAaa -5'
32250 5' -44.3 NC_007022.1 + 153003 0.69 0.999878
Target:  5'- aGCGCGuGC----AACACCUGCAGUUa -3'
miRNA:   3'- cUGUGC-CGauuaUUGUGGAUGUUAAa -5'
32250 5' -44.3 NC_007022.1 + 149138 0.69 0.999878
Target:  5'- uGAUACGGUUGAagauauUGGCGCUUGCGGa-- -3'
miRNA:   3'- -CUGUGCCGAUU------AUUGUGGAUGUUaaa -5'
32250 5' -44.3 NC_007022.1 + 107388 0.7 0.999447
Target:  5'- aGCACGGCUAAUGguAUGCCgucACGGUa- -3'
miRNA:   3'- cUGUGCCGAUUAU--UGUGGa--UGUUAaa -5'
32250 5' -44.3 NC_007022.1 + 54688 0.71 0.998688
Target:  5'- aACACGGaUGAUAccuuCACCUACAAUg- -3'
miRNA:   3'- cUGUGCCgAUUAUu---GUGGAUGUUAaa -5'
32250 5' -44.3 NC_007022.1 + 72051 0.72 0.997182
Target:  5'- aGAUaaAUGGCUAGUGgcagccaaGCGCCUGCAAUc- -3'
miRNA:   3'- -CUG--UGCCGAUUAU--------UGUGGAUGUUAaa -5'
32250 5' -44.3 NC_007022.1 + 81557 0.77 0.945284
Target:  5'- aACAUGGCgacGAUAACACCUGCuGUUa -3'
miRNA:   3'- cUGUGCCGa--UUAUUGUGGAUGuUAAa -5'
32250 5' -44.3 NC_007022.1 + 102515 1.06 0.056282
Target:  5'- cGACACGGCUAAUAACACCUACAAUUUc -3'
miRNA:   3'- -CUGUGCCGAUUAUUGUGGAUGUUAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.