miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32251 5' -48.3 NC_007022.1 + 110094 0.66 0.999721
Target:  5'- -aCCAACGUCAcGCcGGUCAGu---- -3'
miRNA:   3'- gcGGUUGCAGUaCGaCCAGUUuuagu -5'
32251 5' -48.3 NC_007022.1 + 105023 0.66 0.999721
Target:  5'- gGCUAACGaagUUAUGCUGG---AAAUCAa -3'
miRNA:   3'- gCGGUUGC---AGUACGACCaguUUUAGU- -5'
32251 5' -48.3 NC_007022.1 + 87110 0.66 0.999638
Target:  5'- gCGCCGGCGauaacguUUAUGCUgaGGUCA-AGUCc -3'
miRNA:   3'- -GCGGUUGC-------AGUACGA--CCAGUuUUAGu -5'
32251 5' -48.3 NC_007022.1 + 138291 0.66 0.999445
Target:  5'- gCGUCGACGUCggGUUGGgucucccauUCAAcAUCGc -3'
miRNA:   3'- -GCGGUUGCAGuaCGACC---------AGUUuUAGU- -5'
32251 5' -48.3 NC_007022.1 + 79612 0.67 0.99873
Target:  5'- -cCCAu--UCAUGCUGGgCAGAGUCAg -3'
miRNA:   3'- gcGGUugcAGUACGACCaGUUUUAGU- -5'
32251 5' -48.3 NC_007022.1 + 30921 0.67 0.998461
Target:  5'- aUGCCucaaGUgAUGaCUGGUCAAAGUUc -3'
miRNA:   3'- -GCGGuug-CAgUAC-GACCAGUUUUAGu -5'
32251 5' -48.3 NC_007022.1 + 47587 0.67 0.998461
Target:  5'- uCGCCuGACGguauccgAUGCUGGUCAGAu--- -3'
miRNA:   3'- -GCGG-UUGCag-----UACGACCAGUUUuagu -5'
32251 5' -48.3 NC_007022.1 + 140583 0.68 0.996284
Target:  5'- uCGCCGagaugaauagcaACuUCAUGCUGGUCAcggcGAAUUu -3'
miRNA:   3'- -GCGGU------------UGcAGUACGACCAGU----UUUAGu -5'
32251 5' -48.3 NC_007022.1 + 105236 0.68 0.995634
Target:  5'- uCGCCAAacuggcCGUgGUGCUGG-CAAcuUCAu -3'
miRNA:   3'- -GCGGUU------GCAgUACGACCaGUUuuAGU- -5'
32251 5' -48.3 NC_007022.1 + 35012 0.7 0.989529
Target:  5'- aGCCGAUGa---GCUGGUCAAAAUg- -3'
miRNA:   3'- gCGGUUGCaguaCGACCAGUUUUAgu -5'
32251 5' -48.3 NC_007022.1 + 104344 0.72 0.969918
Target:  5'- -aCCAACaUCGcUGCUGGUCAAAGUUc -3'
miRNA:   3'- gcGGUUGcAGU-ACGACCAGUUUUAGu -5'
32251 5' -48.3 NC_007022.1 + 9282 0.74 0.921115
Target:  5'- gCGCCGAUGgcauUCAUGCUGGUgUAAAGUUc -3'
miRNA:   3'- -GCGGUUGC----AGUACGACCA-GUUUUAGu -5'
32251 5' -48.3 NC_007022.1 + 171881 0.76 0.832684
Target:  5'- aCGCCAaaauGCGUUGUGCUGGUUauGAAGUUc -3'
miRNA:   3'- -GCGGU----UGCAGUACGACCAG--UUUUAGu -5'
32251 5' -48.3 NC_007022.1 + 155042 1.09 0.016444
Target:  5'- uCGCCAACGUCAUGCUGGUCAAAAUCAc -3'
miRNA:   3'- -GCGGUUGCAGUACGACCAGUUUUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.