miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32252 3' -49.5 NC_007022.1 + 157877 0.66 0.998648
Target:  5'- --cUCGCGAaAUCccgcgaaaauGAACU-GCGCCGGc -3'
miRNA:   3'- gauAGCGCUaUAG----------CUUGAuCGCGGUC- -5'
32252 3' -49.5 NC_007022.1 + 75977 0.68 0.993878
Target:  5'- ----aGCGAagcUCGAACUGGCgaaGCCAGu -3'
miRNA:   3'- gauagCGCUau-AGCUUGAUCG---CGGUC- -5'
32252 3' -49.5 NC_007022.1 + 27658 0.69 0.987864
Target:  5'- --uUUGCGAUaaGUCGGACUgAGCaGCCAc -3'
miRNA:   3'- gauAGCGCUA--UAGCUUGA-UCG-CGGUc -5'
32252 3' -49.5 NC_007022.1 + 136173 0.69 0.986243
Target:  5'- --cUCGUGGUAUCGAGaaaUGGUGCUg- -3'
miRNA:   3'- gauAGCGCUAUAGCUUg--AUCGCGGuc -5'
32252 3' -49.5 NC_007022.1 + 29750 0.69 0.98446
Target:  5'- ----aGCGAagcUCGAACUGGCgaaGCCAGg -3'
miRNA:   3'- gauagCGCUau-AGCUUGAUCG---CGGUC- -5'
32252 3' -49.5 NC_007022.1 + 149856 0.69 0.98446
Target:  5'- ----aGCGAagcUCGAACUGGCgaaGCCAGg -3'
miRNA:   3'- gauagCGCUau-AGCUUGAUCG---CGGUC- -5'
32252 3' -49.5 NC_007022.1 + 16268 0.71 0.955885
Target:  5'- -gGUCGUGAUGUgGGACaAGUGCCc- -3'
miRNA:   3'- gaUAGCGCUAUAgCUUGaUCGCGGuc -5'
32252 3' -49.5 NC_007022.1 + 167364 0.74 0.880764
Target:  5'- aUAUCGCGGUGgcaaauguucugguUCcggguGAACUGGCGCUAGu -3'
miRNA:   3'- gAUAGCGCUAU--------------AG-----CUUGAUCGCGGUC- -5'
32252 3' -49.5 NC_007022.1 + 167597 1.09 0.01409
Target:  5'- uCUAUCGCGAUAUCGAACUAGCGCCAGu -3'
miRNA:   3'- -GAUAGCGCUAUAGCUUGAUCGCGGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.