miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32254 3' -49.5 NC_007022.1 + 81076 0.66 0.997776
Target:  5'- --uGAAGGUgaaACaucaGUGCAAAUUGCCGg -3'
miRNA:   3'- cggUUUCCG---UGg---UACGUUUAACGGUg -5'
32254 3' -49.5 NC_007022.1 + 13981 0.66 0.997345
Target:  5'- cGCCAAAGGUugCuugauUGU--GUUGCUggGCa -3'
miRNA:   3'- -CGGUUUCCGugGu----ACGuuUAACGG--UG- -5'
32254 3' -49.5 NC_007022.1 + 68652 0.66 0.996847
Target:  5'- cGCCGuaAAGGUGgCGUGCug---GCCAUa -3'
miRNA:   3'- -CGGU--UUCCGUgGUACGuuuaaCGGUG- -5'
32254 3' -49.5 NC_007022.1 + 148794 0.67 0.994872
Target:  5'- gGCCcGAGGUggGCCAUGaauuGAGUcGCCAUc -3'
miRNA:   3'- -CGGuUUCCG--UGGUACg---UUUAaCGGUG- -5'
32254 3' -49.5 NC_007022.1 + 103655 0.67 0.994025
Target:  5'- aGCCAGuuGGGUuUC-UGCAGAgcUUGCCAUa -3'
miRNA:   3'- -CGGUU--UCCGuGGuACGUUU--AACGGUG- -5'
32254 3' -49.5 NC_007022.1 + 52064 0.67 0.994025
Target:  5'- cGCCAGAaGCuuAUCAUGCAuucAUUGCgGCu -3'
miRNA:   3'- -CGGUUUcCG--UGGUACGUu--UAACGgUG- -5'
32254 3' -49.5 NC_007022.1 + 39034 0.68 0.986322
Target:  5'- aCCAAGGGCAaggaaauuUGCugaagauGUUGCCGCg -3'
miRNA:   3'- cGGUUUCCGUggu-----ACGuu-----UAACGGUG- -5'
32254 3' -49.5 NC_007022.1 + 32732 0.69 0.976457
Target:  5'- uGCCAGaAGGCAUCGgccagaugcguaauuUGUuccAUUGCCGCu -3'
miRNA:   3'- -CGGUU-UCCGUGGU---------------ACGuu-UAACGGUG- -5'
32254 3' -49.5 NC_007022.1 + 26442 0.69 0.975402
Target:  5'- uGCCAucGaGCGCC-UGCAAGcUGCuCGCc -3'
miRNA:   3'- -CGGUuuC-CGUGGuACGUUUaACG-GUG- -5'
32254 3' -49.5 NC_007022.1 + 104245 0.7 0.969605
Target:  5'- gGCCAGguAGGCgGCCAUGgGAucauUUGCCuGCu -3'
miRNA:   3'- -CGGUU--UCCG-UGGUACgUUu---AACGG-UG- -5'
32254 3' -49.5 NC_007022.1 + 72069 0.7 0.969605
Target:  5'- aGCCAA--GCGCC-UGCAAucaUGCCAUa -3'
miRNA:   3'- -CGGUUucCGUGGuACGUUua-ACGGUG- -5'
32254 3' -49.5 NC_007022.1 + 163766 0.7 0.966366
Target:  5'- uUCAAAGGCACCGauUGCAAuacccAUUGCg-- -3'
miRNA:   3'- cGGUUUCCGUGGU--ACGUU-----UAACGgug -5'
32254 3' -49.5 NC_007022.1 + 98165 0.7 0.962892
Target:  5'- cUCAuAGGCAggaccCCAUGCGAAUuUGCCGa -3'
miRNA:   3'- cGGUuUCCGU-----GGUACGUUUA-ACGGUg -5'
32254 3' -49.5 NC_007022.1 + 69044 0.71 0.946516
Target:  5'- uGCCAGAGGCGa---GCGGGUUacaGCCGCu -3'
miRNA:   3'- -CGGUUUCCGUgguaCGUUUAA---CGGUG- -5'
32254 3' -49.5 NC_007022.1 + 158928 0.71 0.941778
Target:  5'- uUCGAAGGUGCCAgUGUAuucGUUGCCAa -3'
miRNA:   3'- cGGUUUCCGUGGU-ACGUu--UAACGGUg -5'
32254 3' -49.5 NC_007022.1 + 115022 0.72 0.924265
Target:  5'- uGCCAcAAGGUACUacucucugcccagcGUGCAAAaUGCCAg -3'
miRNA:   3'- -CGGU-UUCCGUGG--------------UACGUUUaACGGUg -5'
32254 3' -49.5 NC_007022.1 + 13450 1.13 0.006251
Target:  5'- cGCCAAAGGCACCAUGCAAAUUGCCACu -3'
miRNA:   3'- -CGGUUUCCGUGGUACGUUUAACGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.