miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32254 5' -57.3 NC_007022.1 + 120823 0.66 0.879829
Target:  5'- aGGagAGAACCCUgCCGGGggUUCUacUCCGc -3'
miRNA:   3'- aCCg-UCUUGGGAaGGCCC--AGGA--AGGU- -5'
32254 5' -57.3 NC_007022.1 + 4571 0.66 0.857911
Target:  5'- gGGUaaauAGAACCUUgaccaUCCGGGUCagcaUCCGu -3'
miRNA:   3'- aCCG----UCUUGGGA-----AGGCCCAGga--AGGU- -5'
32254 5' -57.3 NC_007022.1 + 150600 0.68 0.763694
Target:  5'- cGGCAGGACCUUUCa-GGUUCgccCCGa -3'
miRNA:   3'- aCCGUCUUGGGAAGgcCCAGGaa-GGU- -5'
32254 5' -57.3 NC_007022.1 + 154271 0.69 0.725438
Target:  5'- --aCGGAGCCCUUCgGGGcUCCUUUgGa -3'
miRNA:   3'- accGUCUUGGGAAGgCCC-AGGAAGgU- -5'
32254 5' -57.3 NC_007022.1 + 138186 0.73 0.496155
Target:  5'- gUGGCAGAGCCauagcaucgauauCUUCCGGGU---UCCAa -3'
miRNA:   3'- -ACCGUCUUGG-------------GAAGGCCCAggaAGGU- -5'
32254 5' -57.3 NC_007022.1 + 13484 1.08 0.002753
Target:  5'- gUGGCAGAACCCUUCCGGGUCCUUCCAc -3'
miRNA:   3'- -ACCGUCUUGGGAAGGCCCAGGAAGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.