miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32257 3' -45.4 NC_007022.1 + 154467 0.66 0.99999
Target:  5'- ---cCAAAGG-AGCC-CCGAAG-GGCu -3'
miRNA:   3'- uuauGUUUUUaUCGGaGGCUUCuCCG- -5'
32257 3' -45.4 NC_007022.1 + 65465 0.66 0.99999
Target:  5'- uAAUGCGcAGGAUGGCC----AAGAGGCa -3'
miRNA:   3'- -UUAUGU-UUUUAUCGGaggcUUCUCCG- -5'
32257 3' -45.4 NC_007022.1 + 4416 0.68 0.999914
Target:  5'- --gAUGAAAA-GGCCUCUucGGAGGCc -3'
miRNA:   3'- uuaUGUUUUUaUCGGAGGcuUCUCCG- -5'
32257 3' -45.4 NC_007022.1 + 29879 0.68 0.999851
Target:  5'- uAUACGAcAAaGGCCUCacuuGGAGGCc -3'
miRNA:   3'- uUAUGUUuUUaUCGGAGgcu-UCUCCG- -5'
32257 3' -45.4 NC_007022.1 + 41880 0.68 0.999806
Target:  5'- ---cCGAA---AGcCCUCCGAAGAGGg -3'
miRNA:   3'- uuauGUUUuuaUC-GGAGGCUUCUCCg -5'
32257 3' -45.4 NC_007022.1 + 25550 0.68 0.99975
Target:  5'- ---uCGAAuaucuGCCUCCGAAaAGGCa -3'
miRNA:   3'- uuauGUUUuuau-CGGAGGCUUcUCCG- -5'
32257 3' -45.4 NC_007022.1 + 154638 0.69 0.99968
Target:  5'- uGGUACGGGucguGCUUCUcauaGAGGAGGCg -3'
miRNA:   3'- -UUAUGUUUuuauCGGAGG----CUUCUCCG- -5'
32257 3' -45.4 NC_007022.1 + 10964 0.69 0.999594
Target:  5'- --gACAAAAAUAGUUUuuGggGAaGCa -3'
miRNA:   3'- uuaUGUUUUUAUCGGAggCuuCUcCG- -5'
32257 3' -45.4 NC_007022.1 + 42902 0.69 0.999488
Target:  5'- cAAUGCAuucgcgcuuAGAGUGGCgaCCGucGAGGUg -3'
miRNA:   3'- -UUAUGU---------UUUUAUCGgaGGCuuCUCCG- -5'
32257 3' -45.4 NC_007022.1 + 30090 0.69 0.999488
Target:  5'- --aGCAAGGAagaaGGCCUCCaaguGAGGCc -3'
miRNA:   3'- uuaUGUUUUUa---UCGGAGGcuu-CUCCG- -5'
32257 3' -45.4 NC_007022.1 + 93047 0.69 0.999359
Target:  5'- aAAUACGAAAAaGGCUcCCGAAGGaGCc -3'
miRNA:   3'- -UUAUGUUUUUaUCGGaGGCUUCUcCG- -5'
32257 3' -45.4 NC_007022.1 + 166639 0.7 0.999013
Target:  5'- --gACAAA---GGCCUCUucGGAGGCc -3'
miRNA:   3'- uuaUGUUUuuaUCGGAGGcuUCUCCG- -5'
32257 3' -45.4 NC_007022.1 + 82371 0.7 0.999013
Target:  5'- cGUGCAAAAAUAGUaucUUCCGuugGGAGaGCu -3'
miRNA:   3'- uUAUGUUUUUAUCG---GAGGCu--UCUC-CG- -5'
32257 3' -45.4 NC_007022.1 + 34738 0.72 0.994881
Target:  5'- uAAU-CAAAAcgGGCCUCUccGGAGGCc -3'
miRNA:   3'- -UUAuGUUUUuaUCGGAGGcuUCUCCG- -5'
32257 3' -45.4 NC_007022.1 + 67015 0.72 0.994011
Target:  5'- uGUugGcccuUGGCCUCCGAcGAGGUu -3'
miRNA:   3'- uUAugUuuuuAUCGGAGGCUuCUCCG- -5'
32257 3' -45.4 NC_007022.1 + 28458 0.73 0.989282
Target:  5'- uAUACAAAAAUAGgCUCCGuAGAGc- -3'
miRNA:   3'- uUAUGUUUUUAUCgGAGGCuUCUCcg -5'
32257 3' -45.4 NC_007022.1 + 133916 0.74 0.979767
Target:  5'- --aACAAAAAUGcCCUCCGuAGAGGg -3'
miRNA:   3'- uuaUGUUUUUAUcGGAGGCuUCUCCg -5'
32257 3' -45.4 NC_007022.1 + 63926 0.74 0.974573
Target:  5'- aAAUGCcugaaguuAAAUAGCCUCUucGGAGGCu -3'
miRNA:   3'- -UUAUGuu------UUUAUCGGAGGcuUCUCCG- -5'
32257 3' -45.4 NC_007022.1 + 15912 0.78 0.903178
Target:  5'- --aACAAAAAgacCCUCCGAAGAGGg -3'
miRNA:   3'- uuaUGUUUUUaucGGAGGCUUCUCCg -5'
32257 3' -45.4 NC_007022.1 + 171599 0.8 0.803166
Target:  5'- -uUACAAAAA-GGcCCUCCGAAGAGGg -3'
miRNA:   3'- uuAUGUUUUUaUC-GGAGGCUUCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.