miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32260 3' -45.8 NC_007022.1 + 153643 0.66 0.999988
Target:  5'- -uUCGCuGAGGCuccaauauaaACUGGGUUAuucgguGUCu -3'
miRNA:   3'- guAGCG-CUCCG----------UGACCUAAUuuu---UAG- -5'
32260 3' -45.8 NC_007022.1 + 60480 0.66 0.999988
Target:  5'- --aCGCGAGGCAaucGGAUuugccUGAAGAa- -3'
miRNA:   3'- guaGCGCUCCGUga-CCUA-----AUUUUUag -5'
32260 3' -45.8 NC_007022.1 + 19139 0.66 0.999977
Target:  5'- cCAUCGCGAaucuGGUAUUGGAcgUUGuuugugcacauAAAGUCc -3'
miRNA:   3'- -GUAGCGCU----CCGUGACCU--AAU-----------UUUUAG- -5'
32260 3' -45.8 NC_007022.1 + 109536 0.67 0.999943
Target:  5'- uGUUGaCGGGGCgaaACUGGAcuUUGAGAcUCg -3'
miRNA:   3'- gUAGC-GCUCCG---UGACCU--AAUUUUuAG- -5'
32260 3' -45.8 NC_007022.1 + 168039 0.68 0.999868
Target:  5'- aCAUCccacgGCGGGGUcuCaGGGUUAGAAGUCu -3'
miRNA:   3'- -GUAG-----CGCUCCGu-GaCCUAAUUUUUAG- -5'
32260 3' -45.8 NC_007022.1 + 133930 0.68 0.999639
Target:  5'- --cCGUagaGGGCAUUcGGAUUAAAAAUCg -3'
miRNA:   3'- guaGCGc--UCCGUGA-CCUAAUUUUUAG- -5'
32260 3' -45.8 NC_007022.1 + 56580 0.68 0.999639
Target:  5'- cCGUCGCGGGuaucaauCGCUGGcUUAAGAAUa -3'
miRNA:   3'- -GUAGCGCUCc------GUGACCuAAUUUUUAg -5'
32260 3' -45.8 NC_007022.1 + 8323 0.7 0.998915
Target:  5'- aUAUUGCGAGGCgggacaacaacGCUGGcugUAAAGGUg -3'
miRNA:   3'- -GUAGCGCUCCG-----------UGACCua-AUUUUUAg -5'
32260 3' -45.8 NC_007022.1 + 104786 0.71 0.996057
Target:  5'- cUAUCGCGaAGGCaaACUGGcu--GAAAUCg -3'
miRNA:   3'- -GUAGCGC-UCCG--UGACCuaauUUUUAG- -5'
32260 3' -45.8 NC_007022.1 + 123743 0.72 0.992637
Target:  5'- uUAUCGcCGAGGC-UUGGAU--AAAAUCa -3'
miRNA:   3'- -GUAGC-GCUCCGuGACCUAauUUUUAG- -5'
32260 3' -45.8 NC_007022.1 + 74189 1.12 0.020941
Target:  5'- uCAUCGCGAGGCACUGGAUUAAAAAUCg -3'
miRNA:   3'- -GUAGCGCUCCGUGACCUAAUUUUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.