miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32263 3' -50 NC_007022.1 + 862 0.66 0.996115
Target:  5'- aAGC-GCAA--AGACGCUGGUCCGAa- -3'
miRNA:   3'- -UUGuUGUUggUCUGUGACCAGGUUcg -5'
32263 3' -50 NC_007022.1 + 138222 0.66 0.996115
Target:  5'- aAGCAACAACCAGAagACggcgGGaaUCUggGUu -3'
miRNA:   3'- -UUGUUGUUGGUCUg-UGa---CC--AGGuuCG- -5'
32263 3' -50 NC_007022.1 + 58109 0.66 0.995444
Target:  5'- cAACAuguACAcCCAGGCAacauuUUGGgacCCAAGCg -3'
miRNA:   3'- -UUGU---UGUuGGUCUGU-----GACCa--GGUUCG- -5'
32263 3' -50 NC_007022.1 + 22412 0.67 0.993818
Target:  5'- -cCAACAcucuuCCAGcACGCUGcaCCAGGCg -3'
miRNA:   3'- uuGUUGUu----GGUC-UGUGACcaGGUUCG- -5'
32263 3' -50 NC_007022.1 + 69978 0.67 0.993818
Target:  5'- uGCAAUaAGCCAGACuCUG--CCAAGCu -3'
miRNA:   3'- uUGUUG-UUGGUCUGuGACcaGGUUCG- -5'
32263 3' -50 NC_007022.1 + 160466 0.67 0.992845
Target:  5'- aGACAACAACCaAGAUgcuACUGG-CUAuccGCg -3'
miRNA:   3'- -UUGUUGUUGG-UCUG---UGACCaGGUu--CG- -5'
32263 3' -50 NC_007022.1 + 54717 0.67 0.991754
Target:  5'- cAGCAGCucuuuCCGG-UugUGG-CCAAGCa -3'
miRNA:   3'- -UUGUUGuu---GGUCuGugACCaGGUUCG- -5'
32263 3' -50 NC_007022.1 + 75902 0.67 0.990536
Target:  5'- uACGAaaaaGGCCuAGACAUU-GUCCAGGCc -3'
miRNA:   3'- uUGUUg---UUGG-UCUGUGAcCAGGUUCG- -5'
32263 3' -50 NC_007022.1 + 104461 0.68 0.984195
Target:  5'- -cCGAUGACCGGuccUACUGG-CCAGGUa -3'
miRNA:   3'- uuGUUGUUGGUCu--GUGACCaGGUUCG- -5'
32263 3' -50 NC_007022.1 + 39679 0.68 0.982196
Target:  5'- uAACGAUAACauuuGGCaugggaacgaACUGGUUCGAGCg -3'
miRNA:   3'- -UUGUUGUUGgu--CUG----------UGACCAGGUUCG- -5'
32263 3' -50 NC_007022.1 + 55075 0.69 0.979552
Target:  5'- uACGAUGGCCAGAUGCUGauggacaugcguUCCAAGUa -3'
miRNA:   3'- uUGUUGUUGGUCUGUGACc-----------AGGUUCG- -5'
32263 3' -50 NC_007022.1 + 5909 0.69 0.977634
Target:  5'- cGGCAugGACuCAGACgaugGCUGGUUCAAa- -3'
miRNA:   3'- -UUGUugUUG-GUCUG----UGACCAGGUUcg -5'
32263 3' -50 NC_007022.1 + 96249 0.69 0.975055
Target:  5'- --aAugGACCaaagAGAUGCUGG-CCGAGCg -3'
miRNA:   3'- uugUugUUGG----UCUGUGACCaGGUUCG- -5'
32263 3' -50 NC_007022.1 + 123189 0.7 0.966023
Target:  5'- cAGCAAUAuucCCGGGCuAUUGGUCaGAGCa -3'
miRNA:   3'- -UUGUUGUu--GGUCUG-UGACCAGgUUCG- -5'
32263 3' -50 NC_007022.1 + 90141 0.74 0.843615
Target:  5'- uGCGACAACCAuGACGCcacuuaaaacuaaguUGGcuaUCCAGGCu -3'
miRNA:   3'- uUGUUGUUGGU-CUGUG---------------ACC---AGGUUCG- -5'
32263 3' -50 NC_007022.1 + 120696 1.1 0.008815
Target:  5'- gAACAACAACCAGACACUGGUCCAAGCu -3'
miRNA:   3'- -UUGUUGUUGGUCUGUGACCAGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.