Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32264 | 3' | -40.7 | NC_007022.1 | + | 132850 | 0.66 | 1 |
Target: 5'- gAAGGUUc-CGAa--GCUCGGGUUGAa -3' miRNA: 3'- gUUCUAAuaGUUaaaCGAGCCUAACU- -5' |
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32264 | 3' | -40.7 | NC_007022.1 | + | 149029 | 0.69 | 1 |
Target: 5'- uGAGugUGUCAAagUGCUCGGAcgGGu -3' miRNA: 3'- gUUCuaAUAGUUaaACGAGCCUaaCU- -5' |
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32264 | 3' | -40.7 | NC_007022.1 | + | 167104 | 0.69 | 1 |
Target: 5'- aAAGAUUAUCAAgaUGUUUGGuUUGc -3' miRNA: 3'- gUUCUAAUAGUUaaACGAGCCuAACu -5' |
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32264 | 3' | -40.7 | NC_007022.1 | + | 160716 | 0.67 | 1 |
Target: 5'- --cGAacAUCGAUUggGCUCGGAUuuUGAc -3' miRNA: 3'- guuCUaaUAGUUAAa-CGAGCCUA--ACU- -5' |
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32264 | 3' | -40.7 | NC_007022.1 | + | 63920 | 0.66 | 1 |
Target: 5'- --uGAUUuccUCAuguuUUUGUUUGGAUUGAu -3' miRNA: 3'- guuCUAAu--AGUu---AAACGAGCCUAACU- -5' |
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32264 | 3' | -40.7 | NC_007022.1 | + | 135506 | 0.76 | 0.999201 |
Target: 5'- ---aAUUAUCGGUUUGCUUGGAUgGAu -3' miRNA: 3'- guucUAAUAGUUAAACGAGCCUAaCU- -5' |
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32264 | 3' | -40.7 | NC_007022.1 | + | 135275 | 1.11 | 0.083102 |
Target: 5'- uCAAGAUUAUCAAUUUGCUCGGAUUGAu -3' miRNA: 3'- -GUUCUAAUAGUUAAACGAGCCUAACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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