miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32264 5' -44.2 NC_007022.1 + 70118 0.66 0.999999
Target:  5'- gGUCCAUCCGuuCAAAUCGGa----- -3'
miRNA:   3'- gUAGGUAGGUucGUUUGGCUauuaau -5'
32264 5' -44.2 NC_007022.1 + 6177 0.66 0.999999
Target:  5'- --cCCAUCCAcgaguggucauugcAGCAGAgCCGAUAc--- -3'
miRNA:   3'- guaGGUAGGU--------------UCGUUU-GGCUAUuaau -5'
32264 5' -44.2 NC_007022.1 + 121077 0.66 0.999999
Target:  5'- aUAUCCugaugCCAaaagGGCAAACUGAUAu--- -3'
miRNA:   3'- -GUAGGua---GGU----UCGUUUGGCUAUuaau -5'
32264 5' -44.2 NC_007022.1 + 94444 0.66 0.999999
Target:  5'- uCAUCUAUUCAGGUGAAaaGAUAAc-- -3'
miRNA:   3'- -GUAGGUAGGUUCGUUUggCUAUUaau -5'
32264 5' -44.2 NC_007022.1 + 25012 0.66 0.999999
Target:  5'- uGUCCAUCCuGGGCcAACUgGGUGAUg- -3'
miRNA:   3'- gUAGGUAGG-UUCGuUUGG-CUAUUAau -5'
32264 5' -44.2 NC_007022.1 + 145530 0.66 0.999999
Target:  5'- uCGUUUAUcCCAGGCAucccGCCGAUAu--- -3'
miRNA:   3'- -GUAGGUA-GGUUCGUu---UGGCUAUuaau -5'
32264 5' -44.2 NC_007022.1 + 154667 0.67 0.999997
Target:  5'- aCAUCCAUCUAccAGCAGGuuGGa----- -3'
miRNA:   3'- -GUAGGUAGGU--UCGUUUggCUauuaau -5'
32264 5' -44.2 NC_007022.1 + 141668 0.67 0.999994
Target:  5'- uUAUCaaGUCUAAGCcGGCUGGUGAUUGg -3'
miRNA:   3'- -GUAGg-UAGGUUCGuUUGGCUAUUAAU- -5'
32264 5' -44.2 NC_007022.1 + 54707 0.67 0.999994
Target:  5'- -uUCCGguuguggCCAAGCAAACacgGAUGAUa- -3'
miRNA:   3'- guAGGUa------GGUUCGUUUGg--CUAUUAau -5'
32264 5' -44.2 NC_007022.1 + 122457 0.68 0.999977
Target:  5'- gGUCCAUCCGG--AAACUGAUGAc-- -3'
miRNA:   3'- gUAGGUAGGUUcgUUUGGCUAUUaau -5'
32264 5' -44.2 NC_007022.1 + 23172 0.68 0.999968
Target:  5'- uCGUCCAUaaAAGCGAACgCGGUAu--- -3'
miRNA:   3'- -GUAGGUAggUUCGUUUG-GCUAUuaau -5'
32264 5' -44.2 NC_007022.1 + 67959 0.69 0.999956
Target:  5'- aCAUCCucUCCcGGCAAuACUGGUGAUg- -3'
miRNA:   3'- -GUAGGu-AGGuUCGUU-UGGCUAUUAau -5'
32264 5' -44.2 NC_007022.1 + 89071 0.69 0.999921
Target:  5'- -cUCgCGUCCGGGuCAAucaaacauccGCCGAUGAUUAu -3'
miRNA:   3'- guAG-GUAGGUUC-GUU----------UGGCUAUUAAU- -5'
32264 5' -44.2 NC_007022.1 + 124086 0.69 0.999921
Target:  5'- -uUCCaAUCC-AGCAAcGCCGGUGAUg- -3'
miRNA:   3'- guAGG-UAGGuUCGUU-UGGCUAUUAau -5'
32264 5' -44.2 NC_007022.1 + 74959 0.69 0.999921
Target:  5'- aCAagCAUCCAGGCAGAgCGcAUAAUc- -3'
miRNA:   3'- -GUagGUAGGUUCGUUUgGC-UAUUAau -5'
32264 5' -44.2 NC_007022.1 + 57615 0.69 0.999895
Target:  5'- aCAUCCAUCCccGAGCAAuCCaAUAAa-- -3'
miRNA:   3'- -GUAGGUAGG--UUCGUUuGGcUAUUaau -5'
32264 5' -44.2 NC_007022.1 + 86691 0.7 0.999698
Target:  5'- gGUCCAUCuCAccAGCAAAuCCGcUGAUUAu -3'
miRNA:   3'- gUAGGUAG-GU--UCGUUU-GGCuAUUAAU- -5'
32264 5' -44.2 NC_007022.1 + 96928 0.7 0.999698
Target:  5'- aUcgCCAUCCAGGCA--UCGGUAAa-- -3'
miRNA:   3'- -GuaGGUAGGUUCGUuuGGCUAUUaau -5'
32264 5' -44.2 NC_007022.1 + 123750 0.71 0.999513
Target:  5'- --aCCAUCCAGGCAAAgaGAaaaUGGUUAu -3'
miRNA:   3'- guaGGUAGGUUCGUUUggCU---AUUAAU- -5'
32264 5' -44.2 NC_007022.1 + 135475 0.74 0.993103
Target:  5'- aAUCaAUCCGAGCAAAUUGAUAAUc- -3'
miRNA:   3'- gUAGgUAGGUUCGUUUGGCUAUUAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.