miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32265 3' -42.6 NC_007022.1 + 172542 0.66 1
Target:  5'- cGAAGCGGAUAAagaacuggaauguacCUGgaUGGCCAa-- -3'
miRNA:   3'- cCUUUGCUUAUU---------------GACgaACUGGUaac -5'
32265 3' -42.6 NC_007022.1 + 61184 0.66 1
Target:  5'- uGAAACGAAUAGCU--UUGugCAa-- -3'
miRNA:   3'- cCUUUGCUUAUUGAcgAACugGUaac -5'
32265 3' -42.6 NC_007022.1 + 140239 0.68 1
Target:  5'- aGGAAGCGcaauaccuUGACUGaUUUGACCGc-- -3'
miRNA:   3'- -CCUUUGCuu------AUUGAC-GAACUGGUaac -5'
32265 3' -42.6 NC_007022.1 + 12569 0.66 1
Target:  5'- aGGAAAUcuuuaacgGAGUGauACUGCUUcacACCAUUGc -3'
miRNA:   3'- -CCUUUG--------CUUAU--UGACGAAc--UGGUAAC- -5'
32265 3' -42.6 NC_007022.1 + 41553 0.67 1
Target:  5'- -aGAACGAAUAuccugucgaauuggaAUUGUUUGACCAg-- -3'
miRNA:   3'- ccUUUGCUUAU---------------UGACGAACUGGUaac -5'
32265 3' -42.6 NC_007022.1 + 99017 0.66 1
Target:  5'- uGAGGCGAAgaugaAAUUGCUaccGCCAUUGc -3'
miRNA:   3'- cCUUUGCUUa----UUGACGAac-UGGUAAC- -5'
32265 3' -42.6 NC_007022.1 + 157648 0.69 0.999999
Target:  5'- uGGccAGGCGGAUGGCUGCUUcauGCCGg-- -3'
miRNA:   3'- -CC--UUUGCUUAUUGACGAAc--UGGUaac -5'
32265 3' -42.6 NC_007022.1 + 95924 0.69 0.999999
Target:  5'- --uGACGA---ACUGCUUGACCu--- -3'
miRNA:   3'- ccuUUGCUuauUGACGAACUGGuaac -5'
32265 3' -42.6 NC_007022.1 + 169231 0.75 0.998156
Target:  5'- cGGguACcAAUAGCUGCUgcggauguauUGGCCGUUGa -3'
miRNA:   3'- -CCuuUGcUUAUUGACGA----------ACUGGUAAC- -5'
32265 3' -42.6 NC_007022.1 + 16878 0.75 0.997328
Target:  5'- ---cGCGAAUGGCUGCUUGAgCGa-- -3'
miRNA:   3'- ccuuUGCUUAUUGACGAACUgGUaac -5'
32265 3' -42.6 NC_007022.1 + 142486 1.13 0.044898
Target:  5'- aGGAAACGAAUAACUGCUUGACCAUUGc -3'
miRNA:   3'- -CCUUUGCUUAUUGACGAACUGGUAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.