miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32266 5' -47.2 NC_007022.1 + 59343 0.66 0.999908
Target:  5'- --aGAUGGA-CC-AACGAGGUAUUCCg -3'
miRNA:   3'- uaaCUACUUcGGcUUGUUUCGUAGGG- -5'
32266 5' -47.2 NC_007022.1 + 161859 0.66 0.999908
Target:  5'- gAUUGAauugguaacauUGuuGCCGAuCGAAGaugaAUCCCg -3'
miRNA:   3'- -UAACU-----------ACuuCGGCUuGUUUCg---UAGGG- -5'
32266 5' -47.2 NC_007022.1 + 101513 0.66 0.999903
Target:  5'- cGUUGGUuuaauaaGAAGCUcuACGAAGCAcugcguaUCCCa -3'
miRNA:   3'- -UAACUA-------CUUCGGcuUGUUUCGU-------AGGG- -5'
32266 5' -47.2 NC_007022.1 + 35965 0.66 0.999843
Target:  5'- --gGGUGaAAGCaCGGGC-AAGUAUCCa -3'
miRNA:   3'- uaaCUAC-UUCG-GCUUGuUUCGUAGGg -5'
32266 5' -47.2 NC_007022.1 + 97679 0.66 0.999843
Target:  5'- -aUGAcgauaUGAGGCUugccAACGAAGUAUUCCg -3'
miRNA:   3'- uaACU-----ACUUCGGc---UUGUUUCGUAGGG- -5'
32266 5' -47.2 NC_007022.1 + 107529 0.66 0.999843
Target:  5'- --cGaAUGucGCCGAGCAGcacGGCAUCa- -3'
miRNA:   3'- uaaC-UACuuCGGCUUGUU---UCGUAGgg -5'
32266 5' -47.2 NC_007022.1 + 92460 0.66 0.999797
Target:  5'- uGUUGAugcuacUGAAGCCGAAguu-GaUAUCCCa -3'
miRNA:   3'- -UAACU------ACUUCGGCUUguuuC-GUAGGG- -5'
32266 5' -47.2 NC_007022.1 + 81703 0.67 0.999582
Target:  5'- cAUUGAUGAAGUCGA----AGUAUUCa -3'
miRNA:   3'- -UAACUACUUCGGCUuguuUCGUAGGg -5'
32266 5' -47.2 NC_007022.1 + 100822 0.67 0.999345
Target:  5'- --cGAUGAAGUuuguCGAcugcuCGAcGCGUCCCg -3'
miRNA:   3'- uaaCUACUUCG----GCUu----GUUuCGUAGGG- -5'
32266 5' -47.2 NC_007022.1 + 96261 0.68 0.999
Target:  5'- --aGAUGcuGGCCGAGCGcAAGCGUUg- -3'
miRNA:   3'- uaaCUACu-UCGGCUUGU-UUCGUAGgg -5'
32266 5' -47.2 NC_007022.1 + 131829 0.68 0.999
Target:  5'- gGUUGAUGAAGCCGuaAACGAauuuuaAGCAa--- -3'
miRNA:   3'- -UAACUACUUCGGC--UUGUU------UCGUaggg -5'
32266 5' -47.2 NC_007022.1 + 6481 0.68 0.998622
Target:  5'- ---cGUGAAGCCGAACAAuugcuggaaaaagaaGGUAUCa- -3'
miRNA:   3'- uaacUACUUCGGCUUGUU---------------UCGUAGgg -5'
32266 5' -47.2 NC_007022.1 + 171227 0.68 0.998511
Target:  5'- -----aGAcGCCGAACuAGGCAUCgCCu -3'
miRNA:   3'- uaacuaCUuCGGCUUGuUUCGUAG-GG- -5'
32266 5' -47.2 NC_007022.1 + 73553 0.68 0.998198
Target:  5'- --aGGUGAAGgCGAAaagcGCGUCCUg -3'
miRNA:   3'- uaaCUACUUCgGCUUguuuCGUAGGG- -5'
32266 5' -47.2 NC_007022.1 + 160613 0.7 0.994946
Target:  5'- gGUUGAUcGAAGCUGAAuuCAAAGCAgagUUCg -3'
miRNA:   3'- -UAACUA-CUUCGGCUU--GUUUCGUa--GGG- -5'
32266 5' -47.2 NC_007022.1 + 124479 0.7 0.9941
Target:  5'- -gUGAUGGucaaauaucGGCUGGAUggGGCAcugcuucgcuUCCCg -3'
miRNA:   3'- uaACUACU---------UCGGCUUGuuUCGU----------AGGG- -5'
32266 5' -47.2 NC_007022.1 + 31948 0.7 0.990861
Target:  5'- -cUGAUGGAGCUGA-CGAcGCGUUCg -3'
miRNA:   3'- uaACUACUUCGGCUuGUUuCGUAGGg -5'
32266 5' -47.2 NC_007022.1 + 21407 0.7 0.990861
Target:  5'- --cGAUGAAGgcaagcCCGaAGCAAAGUuUCCCa -3'
miRNA:   3'- uaaCUACUUC------GGC-UUGUUUCGuAGGG- -5'
32266 5' -47.2 NC_007022.1 + 44034 0.73 0.961177
Target:  5'- -aUGGUGGAGCCGAuuacugcggcagcGCAAccaagaacaaaauaGGCAUCaCCu -3'
miRNA:   3'- uaACUACUUCGGCU-------------UGUU--------------UCGUAG-GG- -5'
32266 5' -47.2 NC_007022.1 + 144512 1.12 0.013418
Target:  5'- uAUUGAUGAAGCCGAACAAAGCAUCCCa -3'
miRNA:   3'- -UAACUACUUCGGCUUGUUUCGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.