miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32269 5' -41.8 NC_007022.1 + 160014 1.2 0.022875
Target:  5'- aGGCCUCUUUUAUAUUGCAAACAACCCa -3'
miRNA:   3'- -CCGGAGAAAAUAUAACGUUUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 152827 0.75 0.999496
Target:  5'- cGCUgaaaaguuUAUUGCAAGCGACCCu -3'
miRNA:   3'- cCGGagaaaau-AUAACGUUUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 55109 0.74 0.999807
Target:  5'- cGGCCUCggcagucuuaacuUGUUGCuGGGCAACCUu -3'
miRNA:   3'- -CCGGAGaaaau--------AUAACG-UUUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 89307 0.73 0.999878
Target:  5'- aGGCC-CgccgAUAUUGCGGGCu-CCCa -3'
miRNA:   3'- -CCGGaGaaaaUAUAACGUUUGuuGGG- -5'
32269 5' -41.8 NC_007022.1 + 132249 0.72 0.99998
Target:  5'- aGGCugacgauaCUCaccggGUAaUGCGAGCAACCCg -3'
miRNA:   3'- -CCG--------GAGaaaa-UAUaACGUUUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 146268 0.72 0.999986
Target:  5'- cGCCUCggc---GUUGCcgcucuAGCAGCCCa -3'
miRNA:   3'- cCGGAGaaaauaUAACGu-----UUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 22642 0.69 1
Target:  5'- aGCUUCUUcucuuUGUUGgAGGCAAUCCc -3'
miRNA:   3'- cCGGAGAAaau--AUAACgUUUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 33028 0.69 1
Target:  5'- uGGCCgaCUUUcaUGUAUUGCAuAUGGCUa -3'
miRNA:   3'- -CCGGa-GAAA--AUAUAACGUuUGUUGGg -5'
32269 5' -41.8 NC_007022.1 + 160593 0.68 1
Target:  5'- aGGCgCUCUUccGUAUgcgagaGCAuGCAGCCa -3'
miRNA:   3'- -CCG-GAGAAaaUAUAa-----CGUuUGUUGGg -5'
32269 5' -41.8 NC_007022.1 + 117565 0.68 1
Target:  5'- aGGUCUauugcagaUUUAUGacGCAAACAACCUu -3'
miRNA:   3'- -CCGGAga------AAAUAUaaCGUUUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 97619 0.69 1
Target:  5'- uGUCUCUcgUUAUuuUUGCGuggcucACAACCCa -3'
miRNA:   3'- cCGGAGAa-AAUAu-AACGUu-----UGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 138924 0.66 1
Target:  5'- uGGUCg--UUUAUGUUGaCGuGCAACgCCg -3'
miRNA:   3'- -CCGGagaAAAUAUAAC-GUuUGUUG-GG- -5'
32269 5' -41.8 NC_007022.1 + 56046 0.66 1
Target:  5'- aGCCUCggUUAUGaUGcCAAAUcuGACUCa -3'
miRNA:   3'- cCGGAGaaAAUAUaAC-GUUUG--UUGGG- -5'
32269 5' -41.8 NC_007022.1 + 103980 0.67 1
Target:  5'- gGGCCUuuucCUUUUGUAggG-AAGCGACUUg -3'
miRNA:   3'- -CCGGA----GAAAAUAUaaCgUUUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 116397 0.67 1
Target:  5'- gGGCagg--UUAUAUcgugggauaaUGCGAGCGACCUg -3'
miRNA:   3'- -CCGgagaaAAUAUA----------ACGUUUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 138415 0.68 1
Target:  5'- cGCCgUCUUcUGguUGUUGCuuGgAACCCg -3'
miRNA:   3'- cCGG-AGAAaAU--AUAACGuuUgUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 149676 0.68 1
Target:  5'- cGGCCaUCU---GUA-UGCcuGGCAGCCCc -3'
miRNA:   3'- -CCGG-AGAaaaUAUaACGu-UUGUUGGG- -5'
32269 5' -41.8 NC_007022.1 + 160183 0.68 1
Target:  5'- gGGCCUCUUUUuguuuuUGUUGauaAAACAGuuUa -3'
miRNA:   3'- -CCGGAGAAAAu-----AUAACg--UUUGUUggG- -5'
32269 5' -41.8 NC_007022.1 + 151199 0.68 1
Target:  5'- uGGCCUCggcg-----GCGAGCGcACCUa -3'
miRNA:   3'- -CCGGAGaaaauauaaCGUUUGU-UGGG- -5'
32269 5' -41.8 NC_007022.1 + 78794 0.69 1
Target:  5'- gGGCaUCggugGUGUUGCAAACuuCCa -3'
miRNA:   3'- -CCGgAGaaaaUAUAACGUUUGuuGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.