miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32270 5' -50.9 NC_007022.1 + 122788 0.66 0.994415
Target:  5'- cCAGCUUgCGAUCcaAGCgCAGgCAacaaaUCUCCu -3'
miRNA:   3'- aGUCGAA-GCUAG--UUGgGUC-GU-----AGAGG- -5'
32270 5' -50.9 NC_007022.1 + 4269 0.66 0.993535
Target:  5'- -gAGCUgCG-UCAucACCCAGCAgcaUCUCg -3'
miRNA:   3'- agUCGAaGCuAGU--UGGGUCGU---AGAGg -5'
32270 5' -50.9 NC_007022.1 + 42098 0.66 0.993535
Target:  5'- cCAGCUUgCGAa-GACCCAGUugaccuuUCUUCg -3'
miRNA:   3'- aGUCGAA-GCUagUUGGGUCGu------AGAGG- -5'
32270 5' -50.9 NC_007022.1 + 96454 0.66 0.993535
Target:  5'- --cGCUUgCGcUCGG-CCAGCAUCUCUu -3'
miRNA:   3'- aguCGAA-GCuAGUUgGGUCGUAGAGG- -5'
32270 5' -50.9 NC_007022.1 + 16600 0.67 0.990214
Target:  5'- uUUAGCUuuUCGAUaa--CCGGCAUCUUUu -3'
miRNA:   3'- -AGUCGA--AGCUAguugGGUCGUAGAGG- -5'
32270 5' -50.9 NC_007022.1 + 90022 0.67 0.98885
Target:  5'- aCAGCagCGAUCAcaCCAGCAaaUCUUg -3'
miRNA:   3'- aGUCGaaGCUAGUugGGUCGU--AGAGg -5'
32270 5' -50.9 NC_007022.1 + 35754 0.67 0.987342
Target:  5'- cCAGC-UCGGUC---UCGGCGUCUCUu -3'
miRNA:   3'- aGUCGaAGCUAGuugGGUCGUAGAGG- -5'
32270 5' -50.9 NC_007022.1 + 60942 0.67 0.987342
Target:  5'- aUCAuaaUgGAUCggUCCAGCAUCUCg -3'
miRNA:   3'- -AGUcgaAgCUAGuuGGGUCGUAGAGg -5'
32270 5' -50.9 NC_007022.1 + 49718 0.67 0.985682
Target:  5'- cUUGGCUUcCGAUUauGACCCGGUuuucUUUCCa -3'
miRNA:   3'- -AGUCGAA-GCUAG--UUGGGUCGu---AGAGG- -5'
32270 5' -50.9 NC_007022.1 + 16987 0.67 0.985682
Target:  5'- uUCGGUUUCGcguUCuuuuucuuACCgAGCGUCUCa -3'
miRNA:   3'- -AGUCGAAGCu--AGu-------UGGgUCGUAGAGg -5'
32270 5' -50.9 NC_007022.1 + 132893 0.68 0.981869
Target:  5'- aUCGaCUUCGAUCGugCCGGUaagAUUUUCa -3'
miRNA:   3'- -AGUcGAAGCUAGUugGGUCG---UAGAGG- -5'
32270 5' -50.9 NC_007022.1 + 653 0.68 0.981869
Target:  5'- uUCGGCUUuacCGGUUucggaCCAGCGUCUUUg -3'
miRNA:   3'- -AGUCGAA---GCUAGuug--GGUCGUAGAGG- -5'
32270 5' -50.9 NC_007022.1 + 62964 0.68 0.977339
Target:  5'- aUguGCgagCGAUCcGCCCAGUccaauaGUCUUCg -3'
miRNA:   3'- -AguCGaa-GCUAGuUGGGUCG------UAGAGG- -5'
32270 5' -50.9 NC_007022.1 + 161988 0.69 0.970271
Target:  5'- aUCGGCUugacuuuugcaggcgUUGGUCAAUagcaacccaaUCAGCAUCUCUc -3'
miRNA:   3'- -AGUCGA---------------AGCUAGUUG----------GGUCGUAGAGG- -5'
32270 5' -50.9 NC_007022.1 + 20527 0.69 0.962461
Target:  5'- uUCAGUUUgCGuUCAAUCCAGCGaaUCgCCa -3'
miRNA:   3'- -AGUCGAA-GCuAGUUGGGUCGU--AGaGG- -5'
32270 5' -50.9 NC_007022.1 + 83868 0.69 0.958819
Target:  5'- aCAGCUUCGAU-AACUUGGCuauuuuUCUCUg -3'
miRNA:   3'- aGUCGAAGCUAgUUGGGUCGu-----AGAGG- -5'
32270 5' -50.9 NC_007022.1 + 104958 0.7 0.937002
Target:  5'- gCAGCgUUGAUCAGCUUaucaagAGCuUCUCCg -3'
miRNA:   3'- aGUCGaAGCUAGUUGGG------UCGuAGAGG- -5'
32270 5' -50.9 NC_007022.1 + 74357 0.71 0.920918
Target:  5'- aCAG-UUCGAUCGAUUCGGCAcCUUCa -3'
miRNA:   3'- aGUCgAAGCUAGUUGGGUCGUaGAGG- -5'
32270 5' -50.9 NC_007022.1 + 31643 0.72 0.902568
Target:  5'- uUCAuGCUUCGGggcaaaUCGACCguuaaAGCGUUUCCa -3'
miRNA:   3'- -AGU-CGAAGCU------AGUUGGg----UCGUAGAGG- -5'
32270 5' -50.9 NC_007022.1 + 122543 0.74 0.8173
Target:  5'- aUCGGCUggcaaCGAucUCAACCCAGUuacgggGUCUUCa -3'
miRNA:   3'- -AGUCGAa----GCU--AGUUGGGUCG------UAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.