miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32271 3' -56.5 NC_007022.1 + 146454 0.66 0.903906
Target:  5'- -gGCAAcGCCgAGGCGGUCACGuugauuuGCg -3'
miRNA:   3'- agCGUU-CGG-UCCGUCGGUGCugau---CG- -5'
32271 3' -56.5 NC_007022.1 + 172771 0.66 0.903906
Target:  5'- cUGCAAGCCAGGUAGUUcCGGa---- -3'
miRNA:   3'- aGCGUUCGGUCCGUCGGuGCUgaucg -5'
32271 3' -56.5 NC_007022.1 + 55641 0.66 0.897548
Target:  5'- gCGCAGGCUGuccguaucaauGGCGGUaccgaGCGACaAGCu -3'
miRNA:   3'- aGCGUUCGGU-----------CCGUCGg----UGCUGaUCG- -5'
32271 3' -56.5 NC_007022.1 + 144936 0.66 0.884147
Target:  5'- -aGCGA-CCA-GCGGCUuagauGCGGCUGGCg -3'
miRNA:   3'- agCGUUcGGUcCGUCGG-----UGCUGAUCG- -5'
32271 3' -56.5 NC_007022.1 + 34663 0.66 0.884147
Target:  5'- aUCGauuuuGGUCAGaGCAGCCAgcuCGACUacaucaucAGCg -3'
miRNA:   3'- -AGCgu---UCGGUC-CGUCGGU---GCUGA--------UCG- -5'
32271 3' -56.5 NC_007022.1 + 89935 0.66 0.877112
Target:  5'- aUCGCcGGCCAGGUAucaCCA-GugUAGUu -3'
miRNA:   3'- -AGCGuUCGGUCCGUc--GGUgCugAUCG- -5'
32271 3' -56.5 NC_007022.1 + 50750 0.67 0.862395
Target:  5'- cCGCAAGCCAGaauGgAGUUACGGCgcGGUu -3'
miRNA:   3'- aGCGUUCGGUC---CgUCGGUGCUGa-UCG- -5'
32271 3' -56.5 NC_007022.1 + 55092 0.67 0.854725
Target:  5'- uUCGCGAGCUucucGuGCGGCCuCGGC-AGUc -3'
miRNA:   3'- -AGCGUUCGGu---C-CGUCGGuGCUGaUCG- -5'
32271 3' -56.5 NC_007022.1 + 26251 0.67 0.846854
Target:  5'- cUUGCAGGCgCucgauGGCAGCUuuuGCGGCUuucGCc -3'
miRNA:   3'- -AGCGUUCG-Gu----CCGUCGG---UGCUGAu--CG- -5'
32271 3' -56.5 NC_007022.1 + 90730 0.67 0.830539
Target:  5'- aCGCuucGuCCAGGUGGUCAuaugUGGCUGGCu -3'
miRNA:   3'- aGCGuu-C-GGUCCGUCGGU----GCUGAUCG- -5'
32271 3' -56.5 NC_007022.1 + 61881 0.71 0.6392
Target:  5'- gCGCAGGaaaCAGGCAucCCACGAuCUGGUc -3'
miRNA:   3'- aGCGUUCg--GUCCGUc-GGUGCU-GAUCG- -5'
32271 3' -56.5 NC_007022.1 + 163722 1.13 0.001465
Target:  5'- aUCGCAAGCCAGGCAGCCACGACUAGCg -3'
miRNA:   3'- -AGCGUUCGGUCCGUCGGUGCUGAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.