Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 17619 | 0.68 | 0.999997 |
Target: 5'- -gGAUCUAUCCGUCgaagaaagGCGAUC-ACAUg -3' miRNA: 3'- gaUUAGGUAGGUAG--------UGUUAGuUGUGu -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 19112 | 0.68 | 0.999997 |
Target: 5'- -aGAUCCAUUCAUaCACAccaggcggcauGUCAACGgAa -3' miRNA: 3'- gaUUAGGUAGGUA-GUGU-----------UAGUUGUgU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 20497 | 0.74 | 0.994306 |
Target: 5'- gCUAGUUCAUCCGUUuCAAUCAcCGCu -3' miRNA: 3'- -GAUUAGGUAGGUAGuGUUAGUuGUGu -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 20930 | 0.66 | 1 |
Target: 5'- --cGUCCAUCgacaCAUCAagaaGGUUAGCACGa -3' miRNA: 3'- gauUAGGUAG----GUAGUg---UUAGUUGUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 41037 | 0.66 | 1 |
Target: 5'- ---cUCCAUCCAUUugaaagauuAUAAUCAuCACGg -3' miRNA: 3'- gauuAGGUAGGUAG---------UGUUAGUuGUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 44625 | 0.72 | 0.998843 |
Target: 5'- ---uUCCcguuuauacgggaGUCCAUCACAAUCuauACGCAu -3' miRNA: 3'- gauuAGG-------------UAGGUAGUGUUAGu--UGUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 44880 | 1.12 | 0.035883 |
Target: 5'- aCUAAUCCAUCCAUCACAAUCAACACAa -3' miRNA: 3'- -GAUUAGGUAGGUAGUGUUAGUUGUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 48965 | 0.71 | 0.999822 |
Target: 5'- ----gUCAUCCAUCACGGUUAAUAa- -3' miRNA: 3'- gauuaGGUAGGUAGUGUUAGUUGUgu -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 49261 | 0.67 | 0.999999 |
Target: 5'- ----cCCAUUCAUUACAAUaaCAGCGCc -3' miRNA: 3'- gauuaGGUAGGUAGUGUUA--GUUGUGu -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 54297 | 0.67 | 0.999999 |
Target: 5'- cCUGAUCCGauaUCCAuuauaagaaccauuUCGCAAaugCAGCGCc -3' miRNA: 3'- -GAUUAGGU---AGGU--------------AGUGUUa--GUUGUGu -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 58757 | 0.69 | 0.999988 |
Target: 5'- ---uUCCAaCCAUUACGAUCGccCACAa -3' miRNA: 3'- gauuAGGUaGGUAGUGUUAGUu-GUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 65687 | 0.66 | 1 |
Target: 5'- uUAAUCaGUUCAcCGCAAUCAGgACAc -3' miRNA: 3'- gAUUAGgUAGGUaGUGUUAGUUgUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 73945 | 0.66 | 1 |
Target: 5'- ---uUCCAUCCAguuCAAUCAGgAUAa -3' miRNA: 3'- gauuAGGUAGGUaguGUUAGUUgUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 79928 | 0.68 | 0.999992 |
Target: 5'- -gAGUCCAUCCAaaCGCuuUCAGC-CAg -3' miRNA: 3'- gaUUAGGUAGGUa-GUGuuAGUUGuGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 83822 | 0.75 | 0.99336 |
Target: 5'- aUGAUUCaAUCCAUCAUAAUCGACu-- -3' miRNA: 3'- gAUUAGG-UAGGUAGUGUUAGUUGugu -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 92951 | 0.67 | 0.999999 |
Target: 5'- --uGUCCcUCCAUCGCu-UCAACGa- -3' miRNA: 3'- gauUAGGuAGGUAGUGuuAGUUGUgu -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 95116 | 0.73 | 0.998613 |
Target: 5'- ----aCCAguuUCCAUCGCAcgUAACGCAu -3' miRNA: 3'- gauuaGGU---AGGUAGUGUuaGUUGUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 97669 | 0.7 | 0.999864 |
Target: 5'- uCUAAUCCAUCCuAUCAgCGcccuuauguGUgGACGCAg -3' miRNA: 3'- -GAUUAGGUAGG-UAGU-GU---------UAgUUGUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 121996 | 0.68 | 0.999997 |
Target: 5'- -aGAUCCcugguaguAUUCGUUACGAcaUCAGCGCAa -3' miRNA: 3'- gaUUAGG--------UAGGUAGUGUU--AGUUGUGU- -5' |
|||||||
32275 | 3' | -43.9 | NC_007023.1 | + | 123488 | 0.68 | 0.999992 |
Target: 5'- uUAGUgCAUCCGUCACu-UCGACu-- -3' miRNA: 3'- gAUUAgGUAGGUAGUGuuAGUUGugu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home