miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32277 3' -46.1 NC_007023.1 + 90284 0.66 0.999973
Target:  5'- aAGUUA-ACUGGAACAGGCGaucaUGUaGuGCg -3'
miRNA:   3'- -UCAGUaUGACUUUGUCCGU----ACA-CuUG- -5'
32277 3' -46.1 NC_007023.1 + 180136 0.66 0.999972
Target:  5'- uGGUUAUGCUGAccguuaaugcaaaAACuGGU--GUGAACa -3'
miRNA:   3'- -UCAGUAUGACU-------------UUGuCCGuaCACUUG- -5'
32277 3' -46.1 NC_007023.1 + 154211 0.67 0.99995
Target:  5'- cAGUCGcuUACaGuu-CAGGCAUG-GAGCg -3'
miRNA:   3'- -UCAGU--AUGaCuuuGUCCGUACaCUUG- -5'
32277 3' -46.1 NC_007023.1 + 22487 0.68 0.999678
Target:  5'- cGGUCGUgcguuccugaacACUGAAACGGGUGaacUG-GAACu -3'
miRNA:   3'- -UCAGUA------------UGACUUUGUCCGU---ACaCUUG- -5'
32277 3' -46.1 NC_007023.1 + 173825 0.72 0.993139
Target:  5'- cAGUCAacUACUGggGCAGGUucuaucGAACu -3'
miRNA:   3'- -UCAGU--AUGACuuUGUCCGuaca--CUUG- -5'
32277 3' -46.1 NC_007023.1 + 121844 0.72 0.992054
Target:  5'- cGGUCGUACUGgcACGGGUg---GAACu -3'
miRNA:   3'- -UCAGUAUGACuuUGUCCGuacaCUUG- -5'
32277 3' -46.1 NC_007023.1 + 90529 1.12 0.017826
Target:  5'- aAGUCAUACUGAAACAGGCAUGUGAACg -3'
miRNA:   3'- -UCAGUAUGACUUUGUCCGUACACUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.