miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32278 3' -45.8 NC_007023.1 + 37888 0.66 0.999995
Target:  5'- aGGUGCGuauguGUUUAgUGCgGUAuacGACCCAg -3'
miRNA:   3'- -CCAUGUu----UAGGUaACGgCAU---UUGGGU- -5'
32278 3' -45.8 NC_007023.1 + 3286 0.66 0.999993
Target:  5'- aGGUAuCGAGUCUGgaaGCCGUAGAgCUu -3'
miRNA:   3'- -CCAU-GUUUAGGUaa-CGGCAUUUgGGu -5'
32278 3' -45.8 NC_007023.1 + 98737 0.66 0.999993
Target:  5'- -cUGCAA--CCcgUGCCGcUGAACCUAu -3'
miRNA:   3'- ccAUGUUuaGGuaACGGC-AUUUGGGU- -5'
32278 3' -45.8 NC_007023.1 + 39948 0.66 0.99999
Target:  5'- -cUGCAAAUCCucuUUGCaGUGucCCCAc -3'
miRNA:   3'- ccAUGUUUAGGu--AACGgCAUuuGGGU- -5'
32278 3' -45.8 NC_007023.1 + 49995 0.67 0.999952
Target:  5'- gGGUAaacuUAAAUCCcgUGCCGaUGAAgUCAu -3'
miRNA:   3'- -CCAU----GUUUAGGuaACGGC-AUUUgGGU- -5'
32278 3' -45.8 NC_007023.1 + 46214 0.68 0.999811
Target:  5'- uGGUGCGAcguauUCCAUguUGaCgGUGAAUCCAu -3'
miRNA:   3'- -CCAUGUUu----AGGUA--AC-GgCAUUUGGGU- -5'
32278 3' -45.8 NC_007023.1 + 147767 0.71 0.997961
Target:  5'- --aACGAAUCCGcgcuuuccgUGCCGaAAACCCGa -3'
miRNA:   3'- ccaUGUUUAGGUa--------ACGGCaUUUGGGU- -5'
32278 3' -45.8 NC_007023.1 + 96487 0.71 0.997558
Target:  5'- cGUGgAAGUUCAUacuuUGCUGUAAACCUg -3'
miRNA:   3'- cCAUgUUUAGGUA----ACGGCAUUUGGGu -5'
32278 3' -45.8 NC_007023.1 + 107021 0.72 0.996552
Target:  5'- aGGUACAGAUCCAgcaGuuGUuAACgCAg -3'
miRNA:   3'- -CCAUGUUUAGGUaa-CggCAuUUGgGU- -5'
32278 3' -45.8 NC_007023.1 + 149559 0.72 0.993512
Target:  5'- cGGcUACccuGAUCgGUaGCCGUGAACCCc -3'
miRNA:   3'- -CC-AUGu--UUAGgUAaCGGCAUUUGGGu -5'
32278 3' -45.8 NC_007023.1 + 109788 1.13 0.020453
Target:  5'- uGGUACAAAUCCAUUGCCGUAAACCCAg -3'
miRNA:   3'- -CCAUGUUUAGGUAACGGCAUUUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.