miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32279 3' -35.3 NC_007023.1 + 62599 0.68 1
Target:  5'- aCUGUgcaAUC-AUUUGCugAAAUAAAAAAu -3'
miRNA:   3'- -GACA---UAGaUAAAUGugUUUGUUUUUU- -5'
32279 3' -35.3 NC_007023.1 + 66679 0.77 1
Target:  5'- uUGUAUCgaacgccgUUACGCGAACAAGAu- -3'
miRNA:   3'- gACAUAGaua-----AAUGUGUUUGUUUUuu -5'
32279 3' -35.3 NC_007023.1 + 178929 0.76 1
Target:  5'- uCUGUAUCUcgUcgaaGCAGACGAAAAAa -3'
miRNA:   3'- -GACAUAGAuaAaug-UGUUUGUUUUUU- -5'
32279 3' -35.3 NC_007023.1 + 74648 0.74 1
Target:  5'- -aGUGUCUGgugUUACAgGAugGGAAGAa -3'
miRNA:   3'- gaCAUAGAUa--AAUGUgUUugUUUUUU- -5'
32279 3' -35.3 NC_007023.1 + 129579 0.69 1
Target:  5'- ---gAUCUGUUUAgCACGAGCAAc--- -3'
miRNA:   3'- gacaUAGAUAAAU-GUGUUUGUUuuuu -5'
32279 3' -35.3 NC_007023.1 + 5118 0.67 1
Target:  5'- gCUGUucaaggCUAUcUACAUGGACGAAGAu -3'
miRNA:   3'- -GACAua----GAUAaAUGUGUUUGUUUUUu -5'
32279 3' -35.3 NC_007023.1 + 118078 0.66 1
Target:  5'- -cGUGUCUccagcgUUACACGGACGu---- -3'
miRNA:   3'- gaCAUAGAua----AAUGUGUUUGUuuuuu -5'
32279 3' -35.3 NC_007023.1 + 2090 0.66 1
Target:  5'- cCUGUAUCUG-UUACA-GAACGAu--- -3'
miRNA:   3'- -GACAUAGAUaAAUGUgUUUGUUuuuu -5'
32279 3' -35.3 NC_007023.1 + 77113 0.66 1
Target:  5'- uCUGUcguUCUAuUUUGCAUuauAGCGAAAAAg -3'
miRNA:   3'- -GACAu--AGAU-AAAUGUGu--UUGUUUUUU- -5'
32279 3' -35.3 NC_007023.1 + 40322 0.66 1
Target:  5'- -cGUAUCUuuggUGCGCAAACc----- -3'
miRNA:   3'- gaCAUAGAuaa-AUGUGUUUGuuuuuu -5'
32279 3' -35.3 NC_007023.1 + 13888 0.66 1
Target:  5'- cCUGUGcUUUAUggUACguACAAACAGGAAGa -3'
miRNA:   3'- -GACAU-AGAUAa-AUG--UGUUUGUUUUUU- -5'
32279 3' -35.3 NC_007023.1 + 61816 0.68 1
Target:  5'- -aGUAUCUGcgUUGCGugaUAAACAGAAAu -3'
miRNA:   3'- gaCAUAGAUa-AAUGU---GUUUGUUUUUu -5'
32279 3' -35.3 NC_007023.1 + 137049 1.1 0.341993
Target:  5'- cCUGUAUCUAUUUACACAAACAAAAAAg -3'
miRNA:   3'- -GACAUAGAUAAAUGUGUUUGUUUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.