miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3228 3' -58.2 NC_001514.1 + 2727 0.7 0.067105
Target:  5'- aGUUCaUCCcgguagUGG-GGCCCUGGGGCu -3'
miRNA:   3'- cCAGG-AGGua----ACCaCCGGGACUCCGu -5'
3228 3' -58.2 NC_001514.1 + 6295 0.7 0.064942
Target:  5'- aGGagCUCCucagGGcgagccuuuUGGCCCUGGGGCu -3'
miRNA:   3'- -CCagGAGGuaa-CC---------ACCGGGACUCCGu -5'
3228 3' -58.2 NC_001514.1 + 115 0.93 0.000641
Target:  5'- aGGUCCUCCAUUGGUGGCCCgccaccacgcccGGGGCAu -3'
miRNA:   3'- -CCAGGAGGUAACCACCGGGa-----------CUCCGU- -5'
3228 3' -58.2 NC_001514.1 + 8436 0.93 0.000641
Target:  5'- aGGUCCUCCAUUGGUGGCCCgccaccacgcccGGGGCAu -3'
miRNA:   3'- -CCAGGAGGUAACCACCGGGa-----------CUCCGU- -5'
3228 3' -58.2 NC_001514.1 + 201 1.02 0.000127
Target:  5'- aGGUCCUUUAUUGGUGGCCCUGAGGCAu -3'
miRNA:   3'- -CCAGGAGGUAACCACCGGGACUCCGU- -5'
3228 3' -58.2 NC_001514.1 + 8522 1.02 0.000127
Target:  5'- aGGUCCUUUAUUGGUGGCCCUGAGGCAu -3'
miRNA:   3'- -CCAGGAGGUAACCACCGGGACUCCGU- -5'
3228 3' -58.2 NC_001514.1 + 158 1.1 0.000023
Target:  5'- aGGUCCUCCAUUGGUGGCCCUGAGGCAu -3'
miRNA:   3'- -CCAGGAGGUAACCACCGGGACUCCGU- -5'
3228 3' -58.2 NC_001514.1 + 8479 1.1 0.000023
Target:  5'- aGGUCCUCCAUUGGUGGCCCUGAGGCAu -3'
miRNA:   3'- -CCAGGAGGUAACCACCGGGACUCCGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.