miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3228 5' -54.2 NC_001514.1 + 6991 0.66 0.272502
Target:  5'- uGUGcaucaauGUCAGGUCCUCUugGUUuugagcgagcuagggGGUGGUa -3'
miRNA:   3'- gCAC-------UAGUCCAGGAGG--UAA---------------CCACCGg -5'
3228 5' -54.2 NC_001514.1 + 4827 0.66 0.262279
Target:  5'- aGUGG--GGGUCCcugCCAaacagUUGGcGGCCa -3'
miRNA:   3'- gCACUagUCCAGGa--GGU-----AACCaCCGG- -5'
3228 5' -54.2 NC_001514.1 + 3412 0.66 0.240599
Target:  5'- uGUGAccauuauugccuUCAGaGUCCUCCcacuuaagcauuugAgcacuuuguugggggUUGGUGGCCu -3'
miRNA:   3'- gCACU------------AGUC-CAGGAGG--------------U---------------AACCACCGG- -5'
3228 5' -54.2 NC_001514.1 + 249 0.67 0.232776
Target:  5'- -aUGAUCAGcuaCC-CCAUUGGUGcaGCCa -3'
miRNA:   3'- gcACUAGUCca-GGaGGUAACCAC--CGG- -5'
3228 5' -54.2 NC_001514.1 + 8570 0.67 0.232776
Target:  5'- -aUGAUCAGcuaCC-CCAUUGGUGcaGCCa -3'
miRNA:   3'- gcACUAGUCca-GGaGGUAACCAC--CGG- -5'
3228 5' -54.2 NC_001514.1 + 209 1.02 0.000352
Target:  5'- gCGUGAUCAGGUCCUUUAUUGGUGGCCc -3'
miRNA:   3'- -GCACUAGUCCAGGAGGUAACCACCGG- -5'
3228 5' -54.2 NC_001514.1 + 8530 1.02 0.000352
Target:  5'- gCGUGAUCAGGUCCUUUAUUGGUGGCCc -3'
miRNA:   3'- -GCACUAGUCCAGGAGGUAACCACCGG- -5'
3228 5' -54.2 NC_001514.1 + 123 1.11 6.1e-05
Target:  5'- cCGUGAUCAGGUCCUCCAUUGGUGGCCc -3'
miRNA:   3'- -GCACUAGUCCAGGAGGUAACCACCGG- -5'
3228 5' -54.2 NC_001514.1 + 166 1.11 6.1e-05
Target:  5'- cCGUGAUCAGGUCCUCCAUUGGUGGCCc -3'
miRNA:   3'- -GCACUAGUCCAGGAGGUAACCACCGG- -5'
3228 5' -54.2 NC_001514.1 + 8444 1.11 6.1e-05
Target:  5'- cCGUGAUCAGGUCCUCCAUUGGUGGCCc -3'
miRNA:   3'- -GCACUAGUCCAGGAGGUAACCACCGG- -5'
3228 5' -54.2 NC_001514.1 + 8487 1.11 6.1e-05
Target:  5'- cCGUGAUCAGGUCCUCCAUUGGUGGCCc -3'
miRNA:   3'- -GCACUAGUCCAGGAGGUAACCACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.